PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_26482_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 255aa MW: 26370.5 Da PI: 10.3339 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.5 | 2.3e-38 | 28 | 112 | 2 | 87 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ ++n Cotton_A_26482_BGI-A2_v1.0 28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSVRGAN 109 78******************************************************************9777.2232222222 PP TCP 85 sss 87 s+s Cotton_A_26482_BGI-A2_v1.0 110 STS 112 221 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-33 | 34 | 114 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MSNSEAAAKN GATMDTQRQQ APGNGALAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST VSVSVRGANS TSLTSTTSSS 120 LDHKPLLGST PFLLGKRVRP DDDNAGKDDS GGATVGPGVG SIVGPAGTHT GAFWAVPARP 180 DFGQIWSFAP PPPPEMVVQT AAQQPAAAAF FVQQQQAMGE ASAARVGNYL PGHLNLLASL 240 SGAPGGSGQR DDDPR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017619952.1 | 0.0 | PREDICTED: transcription factor TCP21 | ||||
Swissprot | Q9FMX2 | 1e-94 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1U8I959 | 0.0 | A0A1U8I959_GOSHI; transcription factor TCP21-like | ||||
STRING | Gorai.013G068600.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-68 | TCP family protein |