PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_26426_BGI-A2_v1.0 | ||||||||
Common Name | F383_14230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 383aa MW: 43661.6 Da PI: 6.6433 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.5 | 3.7e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd+++++k +++wyfFs++dkky+tg+r+nrat++ Cotton_A_26426_BGI-A2_v1.0 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIREVDLNKLEPWDIQERCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAA 96 69****************************.9***************964444122455************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+ W+mheyrl Cotton_A_26426_BGI-A2_v1.0 97 GFWKATGRDKVIYS-NCRRIGMRKTLVFYKGRAPHGQKSYWIMHEYRL 143 **************.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-57 | 11 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.498 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MPENMNISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIREV DLNKLEPWDI 60 QERCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NCRRIGMRKT 120 LVFYKGRAPH GQKSYWIMHE YRLDDNIVET NVSNGMMEGT QEEGWVVCRI FKKKNHHKTL 180 ENPISTSLSE KTRNLHMFNT CNEGALEHIL EYMGRSCKED NEANNNNTRF VMSMELAINN 240 NGYYDSFTKL PSLDSPNSAS SYQPIMTENE GSIINSVSGG DFNSVYNNDS GLTNWAALDR 300 LVASHLNGQT ETSRQLACFN DQHMAYCNNT NNTDHQDLEL PAFRSTSPSS SSSIDIWTSF 360 TTRSSSLSSS VIDPLCHVVN ASV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-49 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-49 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-49 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-49 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-49 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-49 | 12 | 175 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-49 | 12 | 175 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847221 | 0.0 | KC847221.1 Gossypium hirsutum NAC domain protein NAC44 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636273.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-133 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0B0PZ09 | 0.0 | A0A0B0PZ09_GOSAR; NAC domain-containing 43-like protein | ||||
STRING | Gorai.008G130300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-122 | NAC family protein |