PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26370_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 136aa MW: 15566.9 Da PI: 8.0261 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.5 | 3.3e-14 | 15 | 71 | 4 | 60 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++ +r+ +NRe+ArrsR RK++++e L ++v +L++ N++L ++++ ++ +a+++ Cotton_A_26370_BGI-A2_v1.0 15 ERKRKRMLSNRESARRSRIRKQKQLEDLVNEVSALQKDNSQLSEKINVTTQRYAEME 71 5678999******************************************99999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-11 | 8 | 62 | No hit | No description |
SMART | SM00338 | 5.7E-16 | 12 | 76 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.99 | 14 | 71 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.2E-12 | 16 | 72 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.94E-12 | 16 | 70 | No hit | No description |
CDD | cd14702 | 3.46E-18 | 17 | 68 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 19 | 34 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MAAVQRPASS SDSDERKRKR MLSNRESARR SRIRKQKQLE DLVNEVSALQ KDNSQLSEKI 60 NVTTQRYAEM ECANNVLRAQ AMELTERLRS LNSVLYIVEV SGYAVDIPEI PDPLMKPWQI 120 PCPVQPIMAL ADMFEC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 36 | RKRKRMLSNRESARRSRIRKQK |
2 | 28 | 35 | RRSRIRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA to the C-box-like motif (5'-TGCTGACGTCA-3'), ABRE elements, G-box-like motif (5'-CCACGTGGCC-3'), DOF (5'-AAAG-3'), I-box (5'-GATAA-3'), BS1 (5'-AGCGGG-3'), MY3 (5'-CGACG-3'), 5'-CAGTGCGC-3' and 5'-ACTCAT-3' sequence in target gene promoters (PubMed:15047879, PubMed:16810321, PubMed:19531597, PubMed:21278122, PubMed:25108460). DNA-binding and subsequent transcription activation is triggered by heterodimerization with other bZIP proteins (e.g. BZIP1, BZIP10 and BZIP25) (PubMed:16810321, PubMed:19531597, PubMed:21278122). Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879, PubMed:16810321). Transcriptional activator of seed maturation (MAT) genes (e.g. AT2S2), including seed storage protein (SSP) and late embryogenesis abundant (LEA) genes (PubMed:19531597). Activated by low energy stress both by transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response, especially when heterodimerized with BZIP1, by triggering accumulation of sepcific proteins including ASN1 and POX1/PRODH1 (PubMed:21278122). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:25108460}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hypoosmolarity (PubMed:15047879, PubMed:16810321). Accumulates during dark-induced starvation (PubMed:21278122). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:21278122}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016693215.1 | 4e-95 | PREDICTED: bZIP transcription factor 53-like | ||||
Refseq | XP_017605386.1 | 4e-95 | PREDICTED: bZIP transcription factor 53-like | ||||
Swissprot | Q9LZP8 | 2e-57 | BZP53_ARATH; bZIP transcription factor 53 | ||||
TrEMBL | A0A1U8JSK2 | 8e-94 | A0A1U8JSK2_GOSHI; bZIP transcription factor 53-like | ||||
STRING | Gorai.001G144200.1 | 2e-91 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3036 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 2e-58 | basic region/leucine zipper motif 53 |
Publications ? help Back to Top | |||
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