PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26317_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 300aa    MW: 33441.6 Da    PI: 8.0214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26317_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-19140194256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Cotton_A_26317_BGI-A2_v1.0 140 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKQLGLRPRQVEVWFQNRRARTK 194
                                 788899***********************************************98 PP
2HD-ZIP_I/II130.56.5e-42140229191
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rlsk+q+++LEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke
  Cotton_A_26317_BGI-A2_v1.0 140 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKE 222
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreel 91 
                                 v+eLr +l
  Cotton_A_26317_BGI-A2_v1.0 223 VQELR-AL 229
                                 ****9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.5E-321113IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466898.36E-19131197IPR009057Homeodomain-like
PROSITE profilePS5007117.459136196IPR001356Homeobox domain
SMARTSM003891.1E-16138200IPR001356Homeobox domain
CDDcd000862.54E-16140197No hitNo description
Gene3DG3DSA:1.10.10.609.8E-19140194IPR009057Homeodomain-like
PfamPF000461.2E-16140194IPR001356Homeobox domain
PRINTSPR000311.5E-5167176IPR000047Helix-turn-helix motif
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5176192IPR000047Helix-turn-helix motif
PfamPF021832.3E-11196230IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-27196239IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVGKEDLGLS LSLGFPQNRH SLQLNLRPSL IPSSVDSCSS VPSGFTAIHK SLWNDVSAPS  60
DPNAESFRGE TRSFLRGIDV NRLPSTVDCE EEAGVSSPNS TISSVSGKRS EREGTNGDEL  120
DIERACSRGI SDEEDGDASR KKLRLSKDQS AILEESFKEH NTLNPKQKMA LAKQLGLRPR  180
QVEVWFQNRR ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVQELRALK LSPQFYMQMT  240
PPTTLTMCPS CERVGASSTV DPRSHHQLPQ NHHRAIPINP WAPAAAPIPH GPLDALRPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144SRKKLRL
2188196RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1347910.0HM134791.1 Gossypium hirsutum homeodomain-leucine zipper protein HD2 (HB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623980.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotP466011e-118HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A2P5X1S30.0A0A2P5X1S3_GOSBA; Uncharacterized protein
STRINGGorai.004G195900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-107homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]