PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26312_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 325aa    MW: 36625 Da    PI: 8.6318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26312_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19182232255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ kl g
  Cotton_A_26312_BGI-A2_v1.0 182 HYRGVRQRP-WGKFAAEIRDPTRRG--SRIWLGTFDTAIEAAKAYDRAAFKLLG 232
                                 7********.**********97665..************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-31181241IPR001471AP2/ERF domain
SMARTSM003804.2E-36182246IPR001471AP2/ERF domain
PfamPF008471.9E-13182232IPR001471AP2/ERF domain
CDDcd000181.99E-30182240No hitNo description
SuperFamilySSF541711.96E-22182241IPR016177DNA-binding domain
PROSITE profilePS5103223.63182240IPR001471AP2/ERF domain
PRINTSPR003672.3E-10183194IPR001471AP2/ERF domain
PRINTSPR003672.3E-10206222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
METSSEISTA LQYIQHYLLD ELSPVGLGNF SNENRWINEV KAGVSTSQPE SLYSQTSSSG  60
SSLAESNFNC LENNDFFKFS PNFRGFQPHR SDVFEYESKP QIIDLITPKS FPSNASSLEF  120
ETKPQITELS TAKPQVSSGC NSKIRKPSLK ISLPHKVEWI QFDKPDLTRP KLKKSNSEDN  180
RHYRGVRQRP WGKFAAEIRD PTRRGSRIWL GTFDTAIEAA KAYDRAAFKL LGSKAILNFP  240
LEAGKLESAA SDGERKRSRD NSEGEEKRAK VVKRESENVT KARDNGDAPL TPSNWTAFWD  300
LDNEIKEIFN VPLLSPLGFS HVMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28181241161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626700.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A1U8MNK70.0A0A1U8MNK7_GOSHI; ethylene-responsive transcription factor 5-like
STRINGGorai.004G195300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-66ethylene responsive element binding factor 5