PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_26309_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29230.9 Da PI: 6.2975 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.3e-19 | 131 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Cotton_A_26309_BGI-A2_v1.0 131 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDKAAYRMRG 181 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 130 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-39 | 131 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.51E-30 | 131 | 189 | No hit | No description |
PROSITE profile | PS51032 | 24.223 | 131 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 131 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-23 | 131 | 191 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-11 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MEMHPSSNET DLAMLDSIRR HLLGESSDFR LDASVDCTTT TAPPVFCRSS SFNRLYPCLA 60 ETWGDLPLKE NDSEDMLVFE FLRDALTVGW APSDNSSIKY TPIKPEPQEI LVEAPAANTV 120 VPAVVPTKAR HYRGVRQRPW GKFAAEIRDP AKNGARVWLG TFETAEDAAL AYDKAAYRMR 180 GSKALLNFPL RVNSGEPDPV RVTSKRASPE PSNFSSSGSE QGSPKRRRKV APSAPVVGEA 240 WLDMSSAAAV EYEIGSRTNS NQLLIS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-41 | 127 | 196 | 1 | 70 | ATERF1 |
3gcc_A | 2e-41 | 127 | 196 | 1 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 223 | 229 | PKRRRKV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625586.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | O80337 | 2e-82 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | A0A1U8MNY2 | 0.0 | A0A1U8MNY2_GOSHI; ethylene-responsive transcription factor 2-like | ||||
STRING | Gorai.004G195000.1 | 1e-175 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17500.1 | 4e-66 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|