PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26283_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 445aa MW: 49441.7 Da PI: 8.4855 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.4 | 1e-10 | 182 | 223 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Cotton_A_26283_BGI-A2_v1.0 182 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 223 6889*************************9777777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.1E-9 | 179 | 246 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.186 | 181 | 225 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.6E-8 | 182 | 224 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.5E-7 | 183 | 225 | No hit | No description |
CDD | cd14708 | 2.84E-22 | 183 | 235 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.3E-8 | 184 | 227 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 186 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.0E-32 | 251 | 326 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MANHRVGETG LTDSGPSSNH HHHHHNIPYA VLHGMNVPQS FMHQEGPAFD FGELEEAIVL 60 QGVKIRNDEA KPPLFTAGRP AATLEMFPSW PMRFQQTPRG SSKSGGESTD SGSGVNTISS 120 KTENQVEPES PISKKTSSLD QQQQVDMASD ISRTGTSHNQ SAAAKTPQEK RRGSTSEKQL 180 DAKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRIKLTQLE QDLQRARSQG FFLGGCAGTV 240 GNISSEDDQR HMSELRTGLN AHLSDSDLRI IVDSYISHYD EIFRLKVAAA KADVFHLITG 300 MWTTPAERCF LWMGGFRPSD LIKMLISQLD PLTEQQVMGI YSLQHSSQQA EEALTQGLEQ 360 LQQSLIDTIA GGPVIDGMQQ MAVALGKLAN LEGFVRQADN LRQQTLHQLS RILTVRQAAR 420 CFLMIGEYYG RLRALSSLWA SRPRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX580227 | 1e-103 | JX580227.1 Gossypium hirsutum clone NBRI_GE12616 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017609047.1 | 0.0 | PREDICTED: transcription factor TGA2-like isoform X1 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A1U8I048 | 0.0 | A0A1U8I048_GOSHI; transcription factor TGA2-like | ||||
STRING | Gorai.006G111800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5524 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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