PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26282_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 247aa    MW: 27218.3 Da    PI: 9.9602
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26282_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.4e-11182223445
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cotton_A_26282_BGI-A2_v1.0 182 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 223
                                 6889*************************9777777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-6179242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186181225IPR004827Basic-leucine zipper domain
PfamPF001702.8E-8182224IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-7183225No hitNo description
CDDcd147081.99E-22183235No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-8184227No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MANHRVGETG LTDSGPSSNH HHHHHNIPYA VLHGMNVPQS FMHQEGPAFD FGELEEAIVL  60
QGVKIRNDEA KPPLFTAGRP AATLEMFPSW PMRFQQTPRG SSKSGGESTD SGSGVNTISS  120
KTENQVEPES PISKKTSSLD QQQQVDMASD ISRTGTSHNQ SAAAKTPQEK RRGSTSEKQL  180
DAKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRIKLTQLE QDLQRARSQG FFLGGCAVLG  240
ISPLDFY
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5802271e-103JX580227.1 Gossypium hirsutum clone NBRI_GE12616 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609600.10.0PREDICTED: uncharacterized protein LOC108455563
SwissprotQ93XM61e-69TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A1U8I0481e-170A0A1U8I048_GOSHI; transcription factor TGA2-like
STRINGGorai.006G111800.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.35e-68bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]