PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26270_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 228aa    MW: 25821.9 Da    PI: 6.5195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26270_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.68e-4341352128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdi.ykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk 79 
                                 + GfrF Pt+eelv++yL+++++g++ +++ vi+ ++i y++ePwdLpk     +k++ ++w++F++r++++a+g r++r+t+
  Cotton_A_26270_BGI-A2_v1.0   4 AIGFRFFPTEEELVSFYLRNQLQGTRQDMHLVIPVLNIfYDLEPWDLPKlageLCKGDVEQWFYFIPRQEREARGGRASRTTA 86 
                                 57***************************889****873678******656765566888*********************** PP

                         NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 sgyWkatg+   v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  Cotton_A_26270_BGI-A2_v1.0  87 SGYWKATGSPGFVYSSDDRVIGMKKTMVFYKGKAPNGRKTKWKMNEYRA 135
                                 ***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-453161IPR003441NAC domain
PROSITE profilePS5100544.4793162IPR003441NAC domain
PfamPF023654.1E-225134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAVAIGFRFF PTEEELVSFY LRNQLQGTRQ DMHLVIPVLN IFYDLEPWDL PKLAGELCKG  60
DVEQWFYFIP RQEREARGGR ASRTTASGYW KATGSPGFVY SSDDRVIGMK KTMVFYKGKA  120
PNGRKTKWKM NEYRAIEALS DPYVAAPPKL RHDFSLCRVY VASSSSRAFD RRPLEAHNNA  180
ATTSGGASGT SHAGGDHYNP AEASEDEFWE LVNNLEEHAI GWEQLNEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-30116715170NO APICAL MERISTEM PROTEIN
1ut4_B2e-30116715170NO APICAL MERISTEM PROTEIN
1ut7_A2e-30116715170NO APICAL MERISTEM PROTEIN
1ut7_B2e-30116715170NO APICAL MERISTEM PROTEIN
4dul_A2e-30116715170NAC domain-containing protein 19
4dul_B2e-30116715170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1300420.0KJ130042.1 Gossypium barbadense NAC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610499.11e-172PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR38e-86NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1U8I0611e-169A0A1U8I061_GOSHI; NAC domain-containing protein 90-like
STRINGGorai.006G113000.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.24e-85NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]