PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26263_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 359aa    MW: 40311.6 Da    PI: 8.8158
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26263_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.2e-4981341128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                 + pGfrF+Ptd el+++yLkkk++g +  + evi+e++i+++ePwdLp k++ ++++ew+fF+ r +ky++g++++rat++gy
  Cotton_A_26263_BGI-A2_v1.0   8 MFPGFRFSPTDVELISYYLKKKLDGYDKCV-EVIPEIEICRYEPWDLPaKSIIKSDNEWFFFCARGRKYPNGSQSRRATEQGY 89 
                                 579***********************9777.99***************767777899************************** PP

                         NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wkatgk+++v+s +++++g+k+tLvf++grapkge+t+W+mhey +
  Cotton_A_26263_BGI-A2_v1.0  90 WKATGKERNVKS-GSNVIGTKRTLVFHTGRAPKGERTEWIMHEYCM 134
                                 ************.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-554149IPR003441NAC domain
PROSITE profilePS5100552.4918150IPR003441NAC domain
PfamPF023653.3E-2510133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSIQASSMFP GFRFSPTDVE LISYYLKKKL DGYDKCVEVI PEIEICRYEP WDLPAKSIIK  60
SDNEWFFFCA RGRKYPNGSQ SRRATEQGYW KATGKERNVK SGSNVIGTKR TLVFHTGRAP  120
KGERTEWIMH EYCMKGKSQD SLVVCRLRKN SEFRLNNNSN RVARNHRELS IVHDSNHATS  180
DGGTDLTGIS EGDKAIEFYS KKATSSNDSH SIEQIDSASE SEQKLSNEVA PTESSTLKKD  240
SDDEEDFFAE ILKDDIIRLD ETSLSASTPE ILPMIATTTH RVSLLQGGAN RRIRLTRTKA  300
DVIQHGTGGI STKKWKSEGP PKCLLSVFSP RTAILVILIT LLALLLPCSN FKSSKVFQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-41714916164NO APICAL MERISTEM PROTEIN
1ut4_B2e-41714916164NO APICAL MERISTEM PROTEIN
1ut7_A2e-41714916164NO APICAL MERISTEM PROTEIN
1ut7_B2e-41714916164NO APICAL MERISTEM PROTEIN
3swm_A2e-41714919167NAC domain-containing protein 19
3swm_B2e-41714919167NAC domain-containing protein 19
3swm_C2e-41714919167NAC domain-containing protein 19
3swm_D2e-41714919167NAC domain-containing protein 19
3swp_A2e-41714919167NAC domain-containing protein 19
3swp_B2e-41714919167NAC domain-containing protein 19
3swp_C2e-41714919167NAC domain-containing protein 19
3swp_D2e-41714919167NAC domain-containing protein 19
4dul_A2e-41714916164NAC domain-containing protein 19
4dul_B2e-41714916164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472350.0KC847235.1 Gossypium hirsutum NAC domain protein NAC58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609605.10.0PREDICTED: NAC domain-containing protein 89-like
SwissprotQ94F581e-101NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A2P5W2390.0A0A2P5W239_GOSBA; Uncharacterized protein
STRINGGorai.006G113700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.14e-94NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]