PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26243_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 308aa    MW: 35105.2 Da    PI: 5.8447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26243_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEde+l++ ++++G g+W++I++  g+ R++k+c++rw +yl
  Cotton_A_26243_BGI-A2_v1.0 14 KGLWSPEEDEKLLRHITKYGHGCWSSIPKQAGLQRCGKSCRLRWINYL 61
                                678*******************************************97 PP
2Myb_DNA-binding47.93.2e-1567110146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg +++eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w++
  Cotton_A_26243_BGI-A2_v1.0  67 RGTFSQEEENLIIELHAVLGNR-WSQIAARLP-GRTDNEIKNLWNS 110
                                 899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-29564IPR009057Homeodomain-like
PROSITE profilePS5129419.409961IPR017930Myb domain
SuperFamilySSF466895.08E-3012108IPR009057Homeodomain-like
SMARTSM007178.2E-141363IPR001005SANT/Myb domain
PfamPF002499.2E-161461IPR001005SANT/Myb domain
CDDcd001675.81E-121761No hitNo description
PROSITE profilePS5129425.99762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2665117IPR009057Homeodomain-like
SMARTSM007177.7E-1466114IPR001005SANT/Myb domain
PfamPF002493.3E-1467111IPR001005SANT/Myb domain
CDDcd001671.62E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRQSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSI PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAARLPGRT DNEIKNLWNS CLKKKLKQKG  120
IDPVTHKPLS EVENGEGSGS NKPSLVGHHP IHQYTSPPPP PPQLSSNWFN PEFPPPMTAS  180
YGPLYYGTTT GGSANNSTWG LVQTQTEEEE EEEEEEEEEE EETKWTEFLN NPLLMAAALQ  240
NQTPQSYYNI EIKSEPCYLT NSSSSSSNDM WWPQTQQQQL PLQHEPLQNP DICGKDMQRL  300
TAAAFGHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277071e-143HQ527707.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GZAIX simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613200.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1U8L1W60.0A0A1U8L1W6_GOSHI; myb-related protein Myb4-like
STRINGGorai.008G133700.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.36e-90myb domain protein 55