PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26203_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 34537.2 Da PI: 4.9306 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g W+ +++ g+ R++k+c++rw +yl Cotton_A_26203_BGI-A2_v1.0 14 KGAWTAEEDQKLISYIQKHGEGGWRFLPQKAGLQRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eEd+ ++++ ++lG++ W++Iar++ +Rt++++k++w+ + Cotton_A_26203_BGI-A2_v1.0 67 RGDFSPEEDKTIIKLQAELGNR-WAAIARHLS-NRTDNEIKNYWNAH 111 899*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.333 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.1E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.88E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.056 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.63E-12 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGRTPFCSSD GLKKGAWTAE EDQKLISYIQ KHGEGGWRFL PQKAGLQRCG KSCRLRWANY 60 LRPGIKRGDF SPEEDKTIIK LQAELGNRWA AIARHLSNRT DNEIKNYWNA HLKKRLANMG 120 ADQVTVSGAS SSSGNSDSNA VTNTECAKPQ QSEPTKKRSA SALLLNKLAT RVTQCVGPLR 180 ASQTLQQPTM PFNGGAENSD IFCHPLPSST PESTSWADNN NISNSLTIPE CGTTNAIDER 240 DSSSSAGVLN AIVASEFASL TCVDELSDWG NTNYSIEPEQ VQIDYSDSMT VGYGGLWDDD 300 VIVVDDDDYT VGSLGFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-26 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-26 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017639917.1 | 0.0 | PREDICTED: transcription factor MYB34 | ||||
Swissprot | O64399 | 7e-65 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | A0A0D2MLR5 | 0.0 | A0A0D2MLR5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G097900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 4e-66 | myb domain protein 34 |