PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26179_BGI-A2_v1.0
Common NameF383_21481
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 204aa    MW: 22269.5 Da    PI: 6.7133
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26179_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.54.1e-42511501100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rdPvyG++g i +l
  Cotton_A_26179_BGI-A2_v1.0  51 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQL 133
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q+q+++l+a+la++++e
  Cotton_A_26179_BGI-A2_v1.0 134 QKQVSELQAQLAKAQAE 150
                                 *************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.75650151IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-4251148IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEHNEKCAQS QSCSSSPRFP SPNSQSPPPP PPAPASPSLP PPPTPTVVLS PCAACKILRR  60
RCVEKCVLAP YFPPTEPYKF TIAHRVFGAS NIIKSLQELP ESQRADAVSS MVYEASARIR  120
DPVYGCAGAI CQLQKQVSEL QAQLAKAQAE IVTMQCQQAN LLAIILEMSQ SKEASISQHQ  180
PYNMDTTCFL DDNNLGSAWE PLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-42431583118LOB family transfactor Ramosa2.1
5ly0_B1e-42431583118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645064.11e-148PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-74LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0B0NVE61e-146A0A0B0NVE6_GOSAR; LOB domain-containing 1-like protein
STRINGGorai.010G203800.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-64LOB domain-containing protein 1