PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26168_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 410aa    MW: 44917.2 Da    PI: 7.3063
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26168_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.31.3e-38842352133
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................s 66 
                                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a  ai el+++                  +
  Cotton_A_26168_BGI-A2_v1.0  84 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAIEWLIKEAADAIAELPSLntsfpdtpkqlsddgteqG 166
                                 689*************************************************************9988888887777766665 PP

                         TCP  67 sssasec.eaesssssasnsssg.kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                 ++sa+ +  +++ ++ ++n+s++  + +++a+s+ s++s++s l+l++ e r kar+rar r ++++ ++
  Cotton_A_26168_BGI-A2_v1.0 167 FDSAE-VeLDGDPNNYQQNQSQQhLSLSKSACSSTSETSKNSGLSLSRsENRVKARERARGRVAKEKGKE 235
                                 55553.2444555555444444435666677999999***********9************766655444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.6E-4185232IPR005333Transcription factor, TCP
PROSITE profilePS5136930.93586144IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.487214232IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEIDEIQTQQ GSKFSRVGNG RSESSRMGQK GSDNHYPDDE EGREVMKRAS ANGGGGDALA  60
DTAAANRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVTT AIQFYDLQDR  120
LGYDQPSKAI EWLIKEAADA IAELPSLNTS FPDTPKQLSD DGTEQGFDSA EVELDGDPNN  180
YQQNQSQQHL SLSKSACSST SETSKNSGLS LSRSENRVKA RERARGRVAK EKGKEQETDI  240
AHQQNVNPIS QNSSFTELLT CGIGSVSNNH TSPSPTGSAH QNPRQWSATQ MDYFTMGLLG  300
PSSSRNQSSG FPGQMQQPQP ILMPPFTVSG ENNQKLQHFS FVPNTDHMIP VATAQPVLGS  360
DYNLNFAISS GIAGFNRGTL QSNSPPFLPH HLQRFSSIDG SPPVENHHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2391145155Putative transcription factor PCF6
5zkt_B1e-2391145155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606925.10.0PREDICTED: transcription factor TCP2-like
SwissprotQ93V439e-74TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1U8PKA70.0A0A1U8PKA7_GOSHI; transcription factor TCP2-like
STRINGGorai.009G153900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-60TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]