PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26156_BGI-A2_v1.0
Common NameF383_12656
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 902aa    MW: 99524.8 Da    PI: 6.3565
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26156_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24128229199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +
  Cotton_A_26156_BGI-A2_v1.0 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVA 208
                                 99*****************************8544444..48***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD+v+F   ++++ +l+++++r+
  Cotton_A_26156_BGI-A2_v1.0 209 GDSVLFI--WNEKNQLLLGIRRA 229
                                 *******..8899999****997 PP
2Auxin_resp1201.8e-39254336182
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                 aahaast+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+
  Cotton_A_26156_BGI-A2_v1.0 254 AAHAASTNSRFTIFYNPRASPSEFVIPLTKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSV 336
                                 79*********************************9789******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-21127228No hitNo description
SMARTSM010192.0E-24128230IPR003340B3 DNA binding domain
PfamPF023623.6E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548128230IPR003340B3 DNA binding domain
PfamPF065072.5E-34254335IPR010525Auxin response factor
PfamPF023098.9E-8762858IPR033389AUX/IAA domain
SuperFamilySSF542774.51E-7762844No hitNo description
PROSITE profilePS5174524.392769853IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MRLSSAGFSP QATEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
EVDVHVPNYP SLPPELICQL HNVTMHADVE TDEVYAQMTL QPLNPQEQKE AYLPAELGTP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LTKYIKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPAGL PSFHGIKDDG LGMNSPLMWL QGDAGRGMPS LNFPGIGVTP  420
WMQPRLDAAS MLGLQNDMHQ AMAAAALQDM RAVDPSKSAT TTLLQFQQPQ NLSCRPAALM  480
HSQMLQQSQP QAFLQGVEDN QHQSETQAQT QPPLVQQQLQ QQNSFNNHQH QQQLQHPLSQ  540
QHQQLVDHQH ISTGVSAMSQ YAPASQSRSS PFQAIPSLCQ QQSFSDSNGH TVTSPIVSPL  600
HSLLGSFPQD EPSGLLNLPR SNPVITSAAW PSKRAAVEVL SSGSPQCVLP QVEQLGPTQT  660
NISHNSISLP PFPGRECSID QAAGTDPQSH LLFGVNIETS SLLLQNGMSS LRGVGSESDS  720
TTIPFSSNYA STAGTDFSVN PAMTPSSCID ELGFLQSPEN VGQENPQTRT FVKVYKSGSF  780
GRSLDISKFS SYNELRSELA RMFGLEGQLE DPLRSGWQLV FVDRENDVLL LGDDPWPEFV  840
NSVWCIKILS PQEVQQMGKR GLELLNSVPV QRLSNGSCDD YASQQDSRNL SSGIASVGSL  900
DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571635647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606826.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U8PE930.0A0A1U8PE93_GOSHI; Auxin response factor
STRINGGorai.009G152700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]