PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_26059_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 152aa MW: 17067.3 Da PI: 6.233 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.2 | 1.2e-37 | 6 | 99 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrr+Ca+dC++apyfp+++p++fa+vhk+FGasn +lpe++r da+ss+vyeA+ar+rdPvyG+vg i+ l Cotton_A_26059_BGI-A2_v1.0 6 PCAACKLLRRRCAEDCIFAPYFPSQDPHRFAIVHKVFGASN------ELPEDQRGDAASSMVYEANARVRDPVYGCVGAISYL 82 7**************************************97......89********************************** PP DUF260 84 qqqleqlkaelallkee 100 q+q++ql+ +l ++++e Cotton_A_26059_BGI-A2_v1.0 83 QNQVSQLQMQLTVAQTE 99 ***********999886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.488 | 5 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-37 | 6 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence Send to blast |
MRSCSPCAAC KLLRRRCAED CIFAPYFPSQ DPHRFAIVHK VFGASNELPE DQRGDAASSM 60 VYEANARVRD PVYGCVGAIS YLQNQVSQLQ MQLTVAQTEL LRIKMHQDSP SPPYLAPTNN 120 FNNIDSQPEY LNFPPSTNVI QDPSLKTESI WT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 5 | 102 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 5 | 102 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640410.1 | 1e-109 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 2e-55 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2P5X9R1 | 1e-109 | A0A2P5X9R1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G112900.1 | 1e-103 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 7e-58 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|