PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26052_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 540aa    MW: 60559 Da    PI: 8.766
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26052_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.63.1e-09140189554
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                                 k+ +r ++NR++A+rsR RK +++   e+kv++Le+    L +++++ k+
  Cotton_A_26052_BGI-A2_v1.0 140 KKLKRVISNRLSAQRSRIRKIQRLCDMEKKVQSLETLVAVLSSKVQREKD 189
                                 899**********************************9999999988665 PP
2bZIP_124.37e-083443871154
                                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1  11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                                 ++NR++A+rsR RK +++   e+kv++Le+    L +++++ k+
  Cotton_A_26052_BGI-A2_v1.0 344 ISNRLSAQRSRIRKIQRLCDMEKKVQSLETLVAVLSSKVQREKD 387
                                 79*****************************9999999988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-7135187No hitNo description
SMARTSM003383.0E-6136207IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.967138201IPR004827Basic-leucine zipper domain
PfamPF077165.4E-7138186IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-7140193No hitNo description
CDDcd147038.07E-12141191No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
SMARTSM003380.0045334405IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-6342391No hitNo description
CDDcd147031.06E-9343389No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-6344385No hitNo description
PfamPF077161.2E-4345384IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MNGKNKMIEQ QKPAAGSGSG SSSASAWPKY SIGASAIPTR FSFMKPANLP ICPTSFNGVN  60
PKPYSMNQVG GAGSSAGASS SATKTSFFQG CHSFAMRSEK NNTDKPLMPP VENSARTEAA  120
NVDVAQVRGG HLPEQNMDPK KLKRVISNRL SAQRSRIRKI QRLCDMEKKV QSLETLVAVL  180
SSKVQREKDK QFLLRIEQQE LRERIEAFAN RETMVDARIE KRRAEIESLR QPQFTSQQQQ  240
MQVQTRHANS NQGGGGDGDY MGKEINRLNQ LSLHQKNPGD VMMSDRQTSG GQLPNVGLDQ  300
YGVGELQNLF LCEPNTQQDG SFESDIEEIQ QILNFDPRDG LLVISNRLSA QRSRIRKIQR  360
LCDMEKKVQS LETLVAVLSS KVQREKDKQF LLRIEQQELR ERIEAFANRE TMVDARIEKR  420
RAEIESLRQP QFTSQQQQMQ VQTRHANSNQ GGGGDGDYMG KEINRLNQLS LHQKNPGDVM  480
MSDRQTSGGQ LPNVGLDQYG VGELQNLFLC EPNTQQDGSF ESDIEEIQQI LNFDPRDGLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752540.10.0PREDICTED: basic leucine zipper 34-like
TrEMBLA0A1U8PMY60.0A0A1U8PMY6_GOSHI; basic leucine zipper 34-like
STRINGGorai.009G112200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-12bZIP family protein