PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26003_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 420aa MW: 46152.9 Da PI: 6.1625 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.3 | 1.9e-14 | 212 | 266 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + kr+rr+ +NRe+ArrsR+RK+a + eLe v +L e ++L k l + +++ Cotton_A_26003_BGI-A2_v1.0 212 DAKRARRMRSNRESARRSRRRKQAHMNELEAQVGQLRVEHSTLLKSLTDTNHKYD 266 68******************************************88877666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.1E-10 | 208 | 261 | No hit | No description |
SMART | SM00338 | 3.3E-17 | 210 | 274 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.611 | 212 | 258 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.0E-12 | 213 | 265 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.41E-10 | 214 | 263 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 217 | 232 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.6E-23 | 281 | 398 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MHTEFSVDDF SDSFWAAPPG MSRSQSEWAF DNFIEEFSGS GGAIPVSRSD ESVIGPSLAE 60 PRPSVSKSEE ADGEGDVVEI KRPGNQNHNS PPSDLAPTFS IDSDEYRAIL KDKLHQACAA 120 VALSRASSVK AEVFSAQAED QALQSRSQIQ GSSKAQGQGE LDATPSEVLA MSTTQTKSKV 180 QMRQTTSVSS GEDSDDDELR DTETTDNMDP ADAKRARRMR SNRESARRSR RRKQAHMNEL 240 EAQVGQLRVE HSTLLKSLTD TNHKYDEAAV DNRILKADIE TLRAKVKMAE ETVKRVTGIN 300 FNSGLLSRHN VASVGMPFVS SPLETSSTAP VPLQPNTNQF FHQPVPLHHQ RMENGFMGNT 360 MVPPIVNSRT EGVKHVNETS ALQHTPRSER VQDQIGPGVS QHMSGWEPQQ HAAAKNKKQN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 233 | RRSRRRKQ |
2 | 228 | 233 | SRRRKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017623587.1 | 0.0 | PREDICTED: light-inducible protein CPRF2-like | ||||
TrEMBL | A0A2P5S8L8 | 0.0 | A0A2P5S8L8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G075400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5848 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 1e-57 | basic leucine zipper 25 |