PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25888_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25919.9 Da    PI: 4.9771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25888_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.5e-182175256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                +++++f++eq++ Le++Fe+++ +  +++ + Ak lgL+ rqV +WFqN+Ra++k
  Cotton_A_25888_BGI-A2_v1.0 21 KNKRRFSDEQIRSLESMFESESRLEPRKKLQVAKDLGLQPRQVAIWFQNKRARRK 75
                                67889************************************************99 PP
2HD-ZIP_I/II118.83e-3822113293
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 +krr+s+eq+++LE++Fe+e++Lep++K ++a++Lglqprqva+WFqn+RAR k+kqlE+dy++L+++yd+l+++ e+L+ke+
  Cotton_A_25888_BGI-A2_v1.0  22 NKRRFSDEQIRSLESMFESESRLEPRKKLQVAKDLGLQPRQVAIWFQNKRARRKSKQLERDYTMLQSNYDNLASKYESLKKEK 104
                                 79********************************************************************************* PP

                 HD-ZIP_I/II  85 eeLreelke 93 
                                 ++L+ +l++
  Cotton_A_25888_BGI-A2_v1.0 105 QALAFQLQK 113
                                 ****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-161179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-171276IPR009057Homeodomain-like
PROSITE profilePS5007117.7341777IPR001356Homeobox domain
SMARTSM003892.8E-142081IPR001356Homeobox domain
PfamPF000462.1E-152175IPR001356Homeobox domain
CDDcd000861.91E-122478No hitNo description
PRINTSPR000315.7E-54857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000315.7E-55773IPR000047Helix-turn-helix motif
PfamPF021838.0E-1577117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEDPFSGMPE ITTTKKKKNN KNKRRFSDEQ IRSLESMFES ESRLEPRKKL QVAKDLGLQP  60
RQVAIWFQNK RARRKSKQLE RDYTMLQSNY DNLASKYESL KKEKQALAFQ LQKLKDLVKK  120
PKEENDGQCC GDQQVITMEG EAIKSDSEEQ HSFSMERSEH GLGVLSDDDS TIMTSYFELE  180
QEPTSFITMV ELGPGGEDWH SFETDGLFDQ SSNGYQWWDF WS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636812.11e-165PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468975e-66ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1U8NGE81e-163A0A1U8NGE8_GOSHI; homeobox-leucine zipper protein ATHB-7-like
STRINGGorai.008G128000.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.19e-65homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]