PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25875_BGI-A2_v1.0
Common NameF383_11100
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 280aa    MW: 32269.5 Da    PI: 9.5213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25875_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-171461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Cotton_A_25875_BGI-A2_v1.0 14 RGPWTPREDTLLVKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                                89******************************99************97 PP
2Myb_DNA-binding52.98.3e-1767112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+ T++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_25875_BGI-A2_v1.0  67 RGNITPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                                 7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.565961IPR017930Myb domain
SuperFamilySSF466894.12E-3011108IPR009057Homeodomain-like
SMARTSM007175.0E-131363IPR001005SANT/Myb domain
PfamPF002495.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-231568IPR009057Homeodomain-like
CDDcd001672.62E-101661No hitNo description
PROSITE profilePS5129426.30262116IPR017930Myb domain
SMARTSM007173.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2669116IPR009057Homeodomain-like
CDDcd001676.85E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDTLLVKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLSQG  120
TDPNTHKKLP PDNPVVVLVP KKKRKKSNKR PNKSKKPTEQ EKPKIHLPKP IRFTSSVQCT  180
TKSSSQGGEN GQVLVPWSEY INDDENRTRF LCYNDDHDLI NNSDFECQSH HHHHHHHDHG  240
LGAQGDSNDS LEKIYEEYLQ LLKTNEDQVQ LDSFAESLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139155PKKKRKKSNKRPNKSKK
2141145KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634935.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A0B0PUN60.0A0A0B0PUN6_GOSAR; Transcription repressor MYB5-like protein
STRINGGorai.008G126700.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-70myb domain protein 5