PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25817_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 179aa    MW: 20661.1 Da    PI: 6.7248
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25817_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1513.1e-1682140563
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                 +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L+++l++ ++  +k+ +e+
  Cotton_A_25817_BGI-A2_v1.0  82 RKQRRMISNRESARRSRMRKQRHLDELWAQVVWLRNENHQLIDKLNHVSESHDKVLQEN 140
                                 689*************************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.7E-1678142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.34680143IPR004827Basic-leucine zipper domain
PfamPF001704.8E-1482140IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-1382132No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-1282154No hitNo description
CDDcd147023.16E-1983134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MQPSEVSGIQ YLVPSNPSPY SPHFSMNQSN KPALDSNQFL NPLYNFYIPP QIQDISPHSS  60
CISSNSTSDE ADEQQLSLII ERKQRRMISN RESARRSRMR KQRHLDELWA QVVWLRNENH  120
QLIDKLNHVS ESHDKVLQEN TQLKEEASEL RQMLFGMRLG HPNSTSVKVD DVALEHGLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746518.11e-130PREDICTED: basic leucine zipper 43-like
RefseqXP_017640760.11e-130PREDICTED: basic leucine zipper 43
SwissprotQ9FMC23e-40BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1U8P8931e-128A0A1U8P893_GOSHI; basic leucine zipper 43-like
TrEMBLA0A2P5YTZ11e-128A0A2P5YTZ1_GOSBA; Uncharacterized protein
STRINGGorai.001G205800.11e-118(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-44basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]