PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25774_BGI-A2_v1.0
Common NameF383_21191
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 211aa    MW: 23127 Da    PI: 8.3379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25774_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18555155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Cotton_A_25774_BGI-A2_v1.0  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                                59*****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-21563No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-19663IPR016177DNA-binding domain
SMARTSM003802.1E-37669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32664IPR001471AP2/ERF domain
PfamPF008472.5E-11655IPR001471AP2/ERF domain
PRINTSPR003673.4E-10718IPR001471AP2/ERF domain
PRINTSPR003673.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPKAAHPGE QNARGGGGGG DDDDDDDRSP LPPKALAELL NAKLRKCCKD QSPSLTCLRL  120
DTDNAHIGVW QKRAGNRSSS NWVMRVELGN KKVDTPASGD RRTLSPGSST TADEIEAGNL  180
MGEEDRIALQ MIEELLNWNC PVTSSTSLIG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16270170ATERF1
3gcc_A1e-16270170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3934761e-135GQ393476.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0441 SSR marker CGR5436 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754933.11e-156PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_017644749.11e-156PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9588e-79SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0B0NPU21e-154A0A0B0NPU2_GOSAR; Ethylene-responsive transcription factor SHINE 3-like protein
TrEMBLA0A1U8PX451e-154A0A1U8PX45_GOSHI; ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A2P5YCB01e-154A0A2P5YCB0_GOSBA; Uncharacterized protein
STRINGGorai.010G114800.11e-132(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.24e-71ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]