PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_25715_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18781.6 Da PI: 8.6088 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.6 | 1.3e-40 | 13 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.............peeeredamsslvyeAearar 70 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+al p ++r da+ss+vyeA+ar+r Cotton_A_25715_BGI-A2_v1.0 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQALqadpiklsklqelPVHQRGDAVSSIVYEANARVR 95 7*********************************************998665555555555566777**************** PP DUF260 71 dPvyGavgvilklqqqleqlkaelallkee 100 dPvyG+vg i++lqqq+++l+++lal+++e Cotton_A_25715_BGI-A2_v1.0 96 DPVYGCVGAISSLQQQIDTLQTQLALTQAE 125 *************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.613 | 12 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-40 | 13 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKESGRKQGA ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQA 60 LQADPIKLSK LQELPVHQRG DAVSSIVYEA NARVRDPVYG CVGAISSLQQ QIDTLQTQLA 120 LTQAEVVHLR VRQTASFPHG FCPTSPSNSG SPTFKLMGSQ TMPIFDMDMV VD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-47 | 9 | 138 | 7 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-47 | 9 | 138 | 7 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394806 | 5e-59 | GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641000.1 | 1e-113 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 2e-73 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0B0MMN6 | 1e-112 | A0A0B0MMN6_GOSAR; LOB domain-containing 4-like protein | ||||
STRING | Gorai.010G170700.1 | 1e-110 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-69 | LOB domain-containing protein 4 |