PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25561_BGI-A2_v1.0
Common NameF383_10441
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 357aa    MW: 41147.9 Da    PI: 4.3921
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25561_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35151072103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k ye+++de+++++isw++n++sfv++d++ef+ ++Lp+yFkhsnf+SF+RQLn+YgF+k+++++         weF+++
  Cotton_A_25561_BGI-A2_v1.0  15 FLRKCYEMVDDEATNSIISWTQNNDSFVIWDMTEFSVRLLPQYFKHSNFSSFIRQLNIYGFRKIDSDR---------WEFAND 88 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                  F +g+k+ll++i r+k +
  Cotton_A_25561_BGI-A2_v1.0  89 GFVRGRKDLLKNIARRKYS 107
                                 ***************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-37599IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.52E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5411104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVKPNETGSQ SIAPFLRKCY EMVDDEATNS IISWTQNNDS FVIWDMTEFS VRLLPQYFKH  60
SNFSSFIRQL NIYGFRKIDS DRWEFANDGF VRGRKDLLKN IARRKYSQGP EQRKSLQQQQ  120
QPENSVGSCE NNENNRLWNE VENLKTDKNA LTQELVKLGQ YQQIADNKLL LLKDRLQGME  180
KSQQQLLSFL IMAMQSPGFL VQLIQPKENN WRMTEASNML EQVSEDTEPV ASEHMIVQYQ  240
PPTIETSKPV LTPMIDSENP HESETKDFWM DIDFVKALMD ESHTPFLPPD LHDDGAWEKL  300
LANDFQGNNE DDGNRNEDGS LYSGMGMEIS GSGALLEKTC SFELLLQNYE ENTKSGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23210416129Heat shock factor protein 1
5d5v_B2e-23210416129Heat shock factor protein 1
5d5v_D2e-23210416129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674050.0KR067405.1 Gossypium hirsutum HSF24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612251.10.0PREDICTED: heat stress transcription factor A-8-like
SwissprotQ9S7U51e-103HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0B0PFM20.0A0A0B0PFM2_GOSAR; Heat stress transcription factor A-8-like protein
STRINGGorai.008G170800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-106heat shock transcription factor A8