PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_25357_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 27094.9 Da PI: 4.8812 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 9.4e-17 | 62 | 109 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ykGVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aa+a++ a + + Cotton_A_25357_BGI-A2_v1.0 62 IYKGVRKRS-WGKWVSEIRQPRK---KSRIWLGTFRTAEMAARAHDVASLTI 109 69****888.**********843...6*******************997765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-11 | 61 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.96E-31 | 61 | 121 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 62 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 62 | 120 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-33 | 62 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.563 | 62 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MAESNHCSSS ETESSITNNN SSSSSLRKPN NPSAMELAAT SMIIDQGKKK QRPRDSSTKH 60 PIYKGVRKRS WGKWVSEIRQ PRKKSRIWLG TFRTAEMAAR AHDVASLTIK GDSATLNFPD 120 LAELLPRPVS LLPRDIQAAA VKAASMVNLN RPSSSSSSSS SSLSESSEEP EELSEIVELP 180 NIEGNFDSFF DSGNEFVLLD SVDVWVYDPS QDFNGGFYDQ IWDVTENFKL NSGSFETFSS 240 ENNLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 44 | 119 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393553 | 1e-134 | GQ393553.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0518 SSR marker CGR5551 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610501.1 | 1e-179 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q39127 | 6e-57 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A1U8I203 | 1e-174 | A0A1U8I203_GOSHI; ethylene-responsive transcription factor TINY-like | ||||
STRING | Gorai.006G097000.1 | 1e-138 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 1e-54 | ERF family protein |
Publications ? help Back to Top | |||
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