PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_25297_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 496aa MW: 55724.1 Da PI: 5.1972

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_25297_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.9	1.8e-34	26	116	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl k+y++++d+++++++sws+n++sfvv+++ +fa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ Cotton_A_25297_BGI-A2_v1.0 26 FLIKTYDMVDDSSTDDIVSWSSNKKSFVVWNPPDFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANE 99 9**************************************************************999.........** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkk 101 F k++++ll++i+r+k Cotton_A_25297_BGI-A2_v1.0 100 DFVKDQRHLLKTIHRRK 116 *************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.9E-37	22	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	6.8E-35	22	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.2E-60	22	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.6E-19	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.3E-30	26	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.6E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	65	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.6E-19	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MDPTAPSASV VGGGGGGGGG GGPAPFLIKT YDMVDDSSTD DIVSWSSNKK SFVVWNPPDF 60 ARLLLPTYFK HNNFSSFIRQ LNTYGFRKID PERWEFANED FVKDQRHLLK TIHRRKPIHS 120 HSNPQGSLID HERAGYEEEI EKLSREKAAL EADVLRSEQE RSSLKHQVEE LTQQADQMER 180 RQETLFNFLE KALQDPAFAE HLFRRIESMD DVAAYNKKRR LPQIDQTKPV GDHSILDNKS 240 CSTPEFGNVV HLDFSNKLRL ELSSAVSEIN LVSQSTQSSN EGEESPQRRV SQGEPKDDNI 300 RPQGLLFTPE TLDISDTGTS FTFNMDSSFS QRVSMNESPA LHSLQQRLSS SEEPDSHISC 360 QLNLTLASSS LQVNKSPSLT RMSQPSWEIG KVSESRSNAN SKDSDSRPFH SRRNMIDGET 420 TLSSSKDGPN TNQEPTAAPV RVNDVFWEQF LTERPGSSDN EEASSNYRAN PYEDQDDKRS 480 GHGLARNTKN IEQLSL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MDPTAPSASV VGGGGGGGGG GGPAPFLIKT YDMVDDSSTD DIVSWSSNKK SFVVWNPPDF  60
ARLLLPTYFK HNNFSSFIRQ LNTYGFRKID PERWEFANED FVKDQRHLLK TIHRRKPIHS  120
HSNPQGSLID HERAGYEEEI EKLSREKAAL EADVLRSEQE RSSLKHQVEE LTQQADQMER  180
RQETLFNFLE KALQDPAFAE HLFRRIESMD DVAAYNKKRR LPQIDQTKPV GDHSILDNKS  240
CSTPEFGNVV HLDFSNKLRL ELSSAVSEIN LVSQSTQSSN EGEESPQRRV SQGEPKDDNI  300
RPQGLLFTPE TLDISDTGTS FTFNMDSSFS QRVSMNESPA LHSLQQRLSS SEEPDSHISC  360
QLNLTLASSS LQVNKSPSLT RMSQPSWEIG KVSESRSNAN SKDSDSRPFH SRRNMIDGET  420
TLSSSKDGPN TNQEPTAAPV RVNDVFWEQF LTERPGSSDN EEASSNYRAN PYEDQDDKRS  480
GHGLARNTKN IEQLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-20	17	115	17	129	Heat shock factor protein 1
5d5v_B	6e-20	17	115	17	129	Heat shock factor protein 1
5d5v_D	6e-20	17	115	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ748616	0.0	KJ748616.1 Gossypium hirsutum HSF13 (HSF13) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631917.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-169	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A075QPU5	0.0	A0A075QPU5_GOSHI; HSF13
STRING	Gorai.005G027500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-172	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]