PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25254_BGI-A2_v1.0
Common NameF383_19022
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 544aa    MW: 59621.9 Da    PI: 8.0377
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25254_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.31.5e-24219263145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cotton_A_25254_BGI-A2_v1.0 219 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 263
                                 79****************************************985 PP
2QLQ61.52.2e-21149185137
                         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 ++FT++Q+++L++Q+l+yKy+++n+P+P++Ll +i+k
  Cotton_A_25254_BGI-A2_v1.0 149 GPFTPSQWMELEHQALIYKYINSNVPIPSNLLIPIRK 185
                                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-12149185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.027150185IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.2E-16150184IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663219263IPR014977WRC domain
PfamPF088796.3E-21220262IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDIGGVVVGL EGFVGSETVV TSSLVSDPET KPKLYGSGFL KQERPGNNED VLLWRSSKLA  60
KTEGVSASEA MPLLLHHKNS LLRSNANAAT SVFSDGVSAS QAMLSFSSAP KSRALSLDKS  120
SQNVRNIFGY NNGGFNGENM HGVLGGDRGP FTPSQWMELE HQALIYKYIN SNVPIPSNLL  180
IPIRKALGST DFSSFSGGPL RTNTLGWGAF RLGFSNNTDP EPGRCRRTDG KKWRCSRDAV  240
ADQKYCERHM NRGRHRSRKP VEGQSGHSAG ATSTTTTKVM STVSSTLASV VAPISGCSES  300
NSLTVAQQQF KNLQPVTAPV NRLLVNKETL GERLHESTLD LKSKENPFLM PMQQLVTYEE  360
NLRNEFGVVF SDSLLNPSHK DSSLINCRTF GSSQDLICQA TVSQHSLREF MDDWPKSQSD  420
RSTISWPEVD VQSDMTQLSI SIPMTASDFM SSTSSPSNEK LSSSPLRLSR EFDPMHMGLG  480
VGSVINEPNH KQANWIPISW KNSMGGPLGE VLHSTNSSAL NLITCDDWNN SPRQLNKDYL  540
RFCF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5669789e-51AJ566978.1 Gossypium hirsutum microsatellite DNA mGhCIR029, clone CIR029.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717785.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A0B0NMG20.0A0A0B0NMG2_GOSAR; Uncharacterized protein
STRINGGorai.010G027700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-94growth-regulating factor 1