PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_25243_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 28409 Da PI: 9.4973 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133 | 2.1e-41 | 33 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeek..ewyfFskrdkkyatgkrknrat 78 +p GfrF+Ptd+el+ +yL k+++k+l+ + ikev +yk++P +L + +++++ + ewyfF++rd+k+++gkr+nra+ Cotton_A_25243_BGI-A2_v1.0 33 MPSGFRFKPTDDELI-FYLMYKARSKPLPP-TRIKEVPLYKYDPDNLTArsgNMSSNGTinEWYFFTSRDRKHPQGKRPNRAA 113 699************.9**********999.67**************85456343333345********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wka +dk+v+s +g+lvglkktLv+ +g+ +k++kt+W+mhey l Cotton_A_25243_BGI-A2_v1.0 114 GDGFWKAVNSDKHVKS-HGKLVGLKKTLVYCRGKPSKAQKTNWIMHEYVL 162 ****************.999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-46 | 30 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.721 | 33 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-22 | 34 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSINKSAAME EDGNQELMVR MKEAEDEAYL KSMPSGFRFK PTDDELIFYL MYKARSKPLP 60 PTRIKEVPLY KYDPDNLTAR SGNMSSNGTI NEWYFFTSRD RKHPQGKRPN RAAGDGFWKA 120 VNSDKHVKSH GKLVGLKKTL VYCRGKPSKA QKTNWIMHEY VLSDPPQTTH KNDHQLDGWA 180 LCRVYNRKPE APKAPEKSSP QNFGSNNLNI QNQIGEQSAL QNFGTEDLNF SESDSFLLYA 240 NFGIGIYSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 18 | 193 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613504.1 | 0.0 | PREDICTED: NAC domain-containing protein 68-like | ||||
Swissprot | K4BWV2 | 2e-49 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A1U8PMA0 | 0.0 | A0A1U8PMA0_GOSHI; NAC domain-containing protein 68-like | ||||
STRING | Gorai.012G073400.1 | 1e-177 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24817 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 3e-49 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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