PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25218_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 268aa    MW: 30707 Da    PI: 7.0425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25218_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-091762346
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                 WT eE +++  a + +G +   +W ++a++++ g+t  +++  ++ 
  Cotton_A_25218_BGI-A2_v1.0 17 YWTREENKRFESALAIYGEDvpdRWMKVAAMIP-GKTVSDVIKQYRE 62
                                5********************************.*******999986 PP
2Myb_DNA-binding40.37.4e-13116160347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Cotton_A_25218_BGI-A2_v1.0 116 PWTEEEHRRFLMGLMKYGKGDWRNISRNFVISKTPTQVASHAQKY 160
                                 8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6931368IPR017884SANT domain
SMARTSM007179.7E-81466IPR001005SANT/Myb domain
SuperFamilySSF466894.0E-121672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-41663IPR009057Homeodomain-like
CDDcd001671.14E-71863No hitNo description
PfamPF002498.7E-81862IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-12108166IPR009057Homeodomain-like
PROSITE profilePS5129419.794109165IPR017930Myb domain
SuperFamilySSF466891.1E-15111164IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-18112164IPR006447Myb domain, plants
SMARTSM007171.8E-11113163IPR001005SANT/Myb domain
CDDcd001672.18E-9116161No hitNo description
PfamPF002494.9E-11116160IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSNSDWFDQE DISRNPYWTR EENKRFESAL AIYGEDVPDR WMKVAAMIPG KTVSDVIKQY  60
RELEEDVFDI ESGRIPIPGY LTSSFTFEMV DNHDFEPYRK RSNAKGPDHE RKKGVPWTEE  120
EHRRFLMGLM KYGKGDWRNI SRNFVISKTP TQVASHAQKY FQRQLSGGKD KKRPSIHDIT  180
TLSITTPNTG FSDNQSGHVL ALHQKLSSTL QKVDHNNDAS AMALNSSQED WFTSSQQYLT  240
ASNGLRFDGQ NLYGNGFHGA QPPQSSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1518831176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850425e-63JX585042.1 Gossypium hirsutum clone NBRI_GE18496 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615346.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-80DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U8PA060.0A0A1U8PA06_GOSHI; transcription factor DIVARICATA-like
STRINGGorai.012G075600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.14e-93MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]