PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_25203_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 735aa MW: 84590.3 Da PI: 5.2399

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_25203_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	127	210	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++l Cotton_A_25203_BGI-A2_v1.0 127 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKL 204 69**************************************99888.....8999*********************** PP FAR1 84 eHnHel 89 eHnH + Cotton_A_25203_BGI-A2_v1.0 205 EHNHLF 210 **76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-19	127	209	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-28	332	425	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	617	653	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0021	628	655	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MTGDPAFSTG DHHHALSPSP PPNLLITMEE GSQNSEQLFE DDGNELEMEG NDIDIDSNSL 60 DIEGNGLDIE SNGLQDDCDG MLEIDDNHES NGDDATAVSI ENGISQGKNY PPPVVGMEFE 120 SYDDAYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTIK EANSRRKETR 180 TGCLAMIRLR LVESNRWRVD EVKLEHNHLF DHERAQNCKS HKKMDAVAKR KVEPTVDVEV 240 RTIKLYRTST ADPVGYGNLN SLEGEISETV DRSKRLKLNK GDSQIIYDFF SHIQLTSPNF 300 VYLIDLNDEG CLRNVFWMDS RSRAAYGYFG DVVAVDTTCL SNKYEIPLVA FVGVNHHGQS 360 ILLGCGLLAD DTFESYVWLF RAWLTCMSGR SPQTIITNHC RAMQSAISEV FPRAHHRLHL 420 SHVMQSLFEN LGELQESGVF QMILNRTVYE TVKVDEFEMG WDDMIRQFGL ADHAWLCTLY 480 EERERWAPVY QKDTFFAGMC TFENGECRSS FFDSFVHKQT SLKEFFGKYE LLVQEERKIE 540 AINDLESRDS SPLLKTRCFY ELQLSKLYTN EIFRRFQDEV VMMPCFSITQ VHANGPVITY 600 MIKEHEAEGD RSNIKNFEVM HDKAGTEIRC ICSCFNFNGY LCRHCLCVLH YNGVEEIPFQ 660 YILSRWRKDF KRLYIPELGS NNIDISNPVQ WFDHLHRRAM QVVEEGMISR DHSTVAWQAF 720 KESLNKVRLV ADKHV

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MTGDPAFSTG DHHHALSPSP PPNLLITMEE GSQNSEQLFE DDGNELEMEG NDIDIDSNSL  60
DIEGNGLDIE SNGLQDDCDG MLEIDDNHES NGDDATAVSI ENGISQGKNY PPPVVGMEFE  120
SYDDAYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTIK EANSRRKETR  180
TGCLAMIRLR LVESNRWRVD EVKLEHNHLF DHERAQNCKS HKKMDAVAKR KVEPTVDVEV  240
RTIKLYRTST ADPVGYGNLN SLEGEISETV DRSKRLKLNK GDSQIIYDFF SHIQLTSPNF  300
VYLIDLNDEG CLRNVFWMDS RSRAAYGYFG DVVAVDTTCL SNKYEIPLVA FVGVNHHGQS  360
ILLGCGLLAD DTFESYVWLF RAWLTCMSGR SPQTIITNHC RAMQSAISEV FPRAHHRLHL  420
SHVMQSLFEN LGELQESGVF QMILNRTVYE TVKVDEFEMG WDDMIRQFGL ADHAWLCTLY  480
EERERWAPVY QKDTFFAGMC TFENGECRSS FFDSFVHKQT SLKEFFGKYE LLVQEERKIE  540
AINDLESRDS SPLLKTRCFY ELQLSKLYTN EIFRRFQDEV VMMPCFSITQ VHANGPVITY  600
MIKEHEAEGD RSNIKNFEVM HDKAGTEIRC ICSCFNFNGY LCRHCLCVLH YNGVEEIPFQ  660
YILSRWRKDF KRLYIPELGS NNIDISNPVQ WFDHLHRRAM QVVEEGMISR DHSTVAWQAF  720
KESLNKVRLV ADKHV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603548.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2P5XJ70	0.0	A0A2P5XJ70_GOSBA; Uncharacterized protein
STRING	Gorai.006G101600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]