PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_25175_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 302aa MW: 33799.6 Da PI: 7.9675

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_25175_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d++k +G g+W+ +++ g++R++k+c++rw++yl Cotton_A_25175_BGI-A2_v1.0 14 RGAWTALEDKILTDYIKVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54.1	3.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Cotton_A_25175_BGI-A2_v1.0 67 RGNISPDEEELIIKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.226	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.21E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.97E-10	16	61	No hit	No description
PROSITE profile	PS51294	25.844	62	116	IPR017930	Myb domain
SMART	SM00717	1.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-25	69	115	IPR009057	Homeodomain-like
CDD	cd00167	2.54E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0006970	Biological Process	response to osmotic stress
GO:0010023	Biological Process	proanthocyanidin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILTDYIK VHGEGRWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEELIIK LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRVSDRQ 120 KSPAAPSKNP EAARRGTAGN GNTNGNGSGS SSTHVVRTRA TRCSKVFINP PHYTQNRDPK 180 PSSTCSNHGD HREPKTMNEL LLPIMSESEN EGTTDHISSD FTFDFNMGEF CLSDLLNSDF 240 CDVNELNYSN GFDSSPSPDQ PPMDFSDEML KEWTAAASTH CYHQSAASNL QSLPPFIENG 300 IE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF336282	0.0	AF336282.1 Gossypium hirsutum GHMYB10 (ghmyb10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629636.1	0.0	PREDICTED: transcription factor TT2-like
TrEMBL	A0A346KJX1	0.0	A0A346KJX1_GOSAR; Transcription factor TT2
STRING	Gorai.010G087200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-54	MYB family protein