PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25115_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 370aa    MW: 42504.8 Da    PI: 5.953
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25115_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.31.6e-45211501127
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknrat 78 
                                 lp+G+rF+Ptd+el+++yL++k++g +l+  + i+ev+ y+++P++L +     + ++ ekewy+F++r++ky++g+r+ r++
  Cotton_A_25115_BGI-A2_v1.0  21 LPAGYRFKPTDQELMDYYLRRKISGLPLPP-NKIREVNFYSHDPETLTAmnnkvSSNEVEKEWYYFTPRERKYTNGSRPARKA 102
                                 799************************999.77**************84355433333566********************** PP

                         NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                  +gyWkatg dk+vl  +g+++g kktLvf++g+ pkg+kt+W+mhey 
  Cotton_A_25115_BGI-A2_v1.0 103 GNGYWKATGVDKQVLL-NGKKIGSKKTLVFHEGKPPKGSKTNWIMHEYV 150
                                 ****************.999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-5120177IPR003441NAC domain
PROSITE profilePS5100550.63621178IPR003441NAC domain
PfamPF023654.6E-2422150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MENSMLKRLK EEDDEEYFRM LPAGYRFKPT DQELMDYYLR RKISGLPLPP NKIREVNFYS  60
HDPETLTAMN NKVSSNEVEK EWYYFTPRER KYTNGSRPAR KAGNGYWKAT GVDKQVLLNG  120
KKIGSKKTLV FHEGKPPKGS KTNWIMHEYV SSHAPVRVRH GKEDMKLDNW VLCKLYQNSR  180
EAKQKHRTTQ EGNGLECQEK VEADIAAIIP NKMAAAVSES INMVASPAYH QYEQLDVESF  240
NMNFEQDTNR IPEQGYPMPL FGENSNYYMF DNNSTLGGGF QQQVPNFGDF VTNAAAAAPV  300
TSMFPLGNQF QSMANAGFNL PPLPLQFQPQ WSELQPPPQQ FSGVNPDFYF SVDEYLLDYE  360
FGMQPPPEFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-472118420174NAC domain-containing protein 19
3swm_B3e-472118420174NAC domain-containing protein 19
3swm_C3e-472118420174NAC domain-containing protein 19
3swm_D3e-472118420174NAC domain-containing protein 19
3swp_A3e-472118420174NAC domain-containing protein 19
3swp_B3e-472118420174NAC domain-containing protein 19
3swp_C3e-472118420174NAC domain-containing protein 19
3swp_D3e-472118420174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147510.0JX614751.1 Gossypium hirsutum clone NBRI_GE58375 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5YTG30.0A0A2P5YTG3_GOSBA; Uncharacterized protein
STRINGGorai.011G269400.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3576222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-49NAC domain containing protein 47