PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25113_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 396aa    MW: 44657.9 Da    PI: 8.6319
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25113_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.62.9e-102262631954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yps +e+  LA+++gL+ +qV++WF N R +
  Cotton_A_25113_BGI-A2_v1.0 226 FEHflHPYPSDTEKLMLAQQTGLSRTQVSNWFINARVR 263
                                 665559******************************88 PP
2BELL71.51.5e-231091631872
                        BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                  V+++Yk y++q+q v+ssF++v glg+a+pY+ +A ka+++hF cLk+ai +qi
  Cotton_A_25113_BGI-A2_v1.0 109 TVYRKYKLYCQQMQSVVSSFKCVSGLGNAAPYVCFAFKAVAKHFSCLKNAILDQI 163
                                 699**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.6E-1081161IPR006563POX domain
PfamPF075267.6E-18110159IPR006563POX domain
SMARTSM003891.3E-11207271IPR001356Homeobox domain
CDDcd000861.08E-12207268No hitNo description
PROSITE profilePS5007112.115208267IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-28210271IPR009057Homeodomain-like
SuperFamilySSF466892.57E-18210273IPR009057Homeodomain-like
PfamPF059201.5E-18224263IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAETNEPFHI PQQNRKNKLR FTIETNQHQQ QAFMHGPQCG SGLALSLAFQ HNNPKIMSNL  60
PLSLNQQNLQ IRSSVPLGPF TGYASVLKSS KFLIPAQQIL DQFVGVDYTV YRKYKLYCQQ  120
MQSVVSSFKC VSGLGNAAPY VCFAFKAVAK HFSCLKNAIL DQIQFAGKTV SIVNNGGVDK  180
VNVPGVWTSD QQGINNQNPI FLHHPLWRSQ RGLPDHAVAV LKTWLFEHFL HPYPSDTEKL  240
MLAQQTGLSR TQVSNWFINA RVRLWKPMVE EIHNLELRQA QIQTKTTNQD PKLPHFITSQ  300
EVQNVQTKRP RNEAVYDEET ELQKSTSPCI DQIPSNQHNN IGVGGTSGFC LALCLNQNNG  360
VELEQQPLLP MNLCHNFRLE SDGELSLKPG FDVGRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15213271563Homeobox protein Meis2
3k2a_B1e-15213271563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5243791e-126HQ524379.1 Gossypium herbaceum clone NBRI_D101 simple sequence repeat marker, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618844.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM87e-69BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1U8MDG90.0A0A1U8MDG9_GOSHI; BEL1-like homeodomain protein 9
STRINGGorai.011G271200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1761579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.15e-71TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]