PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_25101_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 42053.4 Da PI: 5.954 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.2 | 2.1e-46 | 27 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknrat 78 lppG+rF+P+deelv++yL+ k++g +l+ + i+ev++y+++P++L + + ++ ekewyfF++r++ky++g+r+ r++ Cotton_A_25101_BGI-A2_v1.0 27 LPPGYRFKPRDEELVNYYLRLKISGLPLPP-NRIREVNLYRHDPETLTArnnyiSSNEVEKEWYFFTPRERKYTNGSRPARKA 108 79*************************999.77**************84456543344667********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatg dk+v+ kg+++g+kktLvfy+g+ p+g kt+W mhey l Cotton_A_25101_BGI-A2_v1.0 109 GNGYWKATGADKAVIL-KGRKIGCKKTLVFYEGKPPRGFKTNWAMHEYVL 157 ****************.9999***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-53 | 25 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.869 | 27 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-25 | 28 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MSNNGIFQDS MLKKQKEEEG EEYFRSLPPG YRFKPRDEEL VNYYLRLKIS GLPLPPNRIR 60 EVNLYRHDPE TLTARNNYIS SNEVEKEWYF FTPRERKYTN GSRPARKAGN GYWKATGADK 120 AVILKGRKIG CKKTLVFYEG KPPRGFKTNW AMHEYVLSDA PVRVRHGKED MKLDNWVLCR 180 LYKNRREAKQ KQIIPEEGND LACQEKVEPH KMAEPVSEPN NMVVPPVYDQ HEQLEVQPAN 240 MNIGQDTNWF PELDNLMPVS NDYGNYYMFD NNPTHGGGFQ QVPNYDDFVT NAAAAAPAPF 300 CSTFPLDNQF QSMGDAGFNL PPPQLQFQPH WPALPSPPLQ FSGVNTGFDL LVDEYLLDPE 360 LGMPPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 12 | 187 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847254 | 0.0 | KC847254.1 Gossypium hirsutum NAC domain protein NAC77 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5Y9L6 | 0.0 | A0A2P5Y9L6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G269500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17827 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-53 | NAC family protein |