PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25067_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 266aa    MW: 29138.3 Da    PI: 9.7645
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25067_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19132181255
                         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa a+++a++ ++g
  Cotton_A_25067_BGI-A2_v1.0 132 RYRGVRRRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAAMAYDEAALGFRG 181
                                 7********.**********66.....56**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.7E-32132190IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22132190IPR016177DNA-binding domain
PROSITE profilePS5103225.159132189IPR001471AP2/ERF domain
SMARTSM003801.3E-35132195IPR001471AP2/ERF domain
PfamPF008472.8E-13132181IPR001471AP2/ERF domain
PRINTSPR003671.5E-11133144IPR001471AP2/ERF domain
CDDcd000182.04E-15140191No hitNo description
PRINTSPR003671.5E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKREEGSWSS SSVRREREMR AVVSALTHVV AGEEPVADNE NLDGFGSCIG DNGAASSWRR  60
SRQKRGREQL EVKEKEGSSS GSRGGNFRRR GGGYSCSAGV QDTEAEANTR AQLAPTYEYK  120
SNEKYKEEAG RRYRGVRRRP WGKWAAEIRD PFKAARVWLG TFDTAEAAAM AYDEAALGFR  180
GSKAKLNFPE NVKLRSPPSN LTTTLLPIFY SPNTLLSIPT ILHSQCHDSL VQNPLVSSTS  240
IGSRAQSCSS PSTSVFPIQG GSFGDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-23130192366ATERF1
3gcc_A7e-23130192366ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964RSRQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631958.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2P5YXV71e-157A0A2P5YXV7_GOSBA; Uncharacterized protein
STRINGGorai.011G114900.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2481534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-22ERF family protein