PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24993_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 116aa    MW: 13748.4 Da    PI: 5.1253
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24993_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.1e-34111012101
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k ye+++de ++++isws+ + sf+++d++ef+ ++LpkyFkhsnf+SF+RQLn+YgF+kv+++          weF+++
  Cotton_A_24993_BGI-A2_v1.0  11 FLTKCYEMVDDEVTDSIISWSQYNGSFIIWDMTEFTGHLLPKYFKHSNFSSFIRQLNIYGFRKVDTDY---------WEFAND 84 
                                 9***************************************************************9988.........****** PP

                                 XXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkk 101
                                  F kg+k+ll++i r +
  Cotton_A_24993_BGI-A2_v1.0  85 GFIKGRKDLLKNIARWQ 101
                                 *************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-36495IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-507100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-32799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-201134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-301199IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-204961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MVKASQSTAP FLTKCYEMVD DEVTDSIISW SQYNGSFIIW DMTEFTGHLL PKYFKHSNFS  60
SFIRQLNIYG FRKVDTDYWE FANDGFIKGR KDLLKNIARW QYSQGSEQQN NENFEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2449912119Heat shock factor protein 1
5d5u_B1e-2449921128Heat shock factor protein 1
5d5v_B1e-2449921128Heat shock factor protein 1
5d5v_D1e-2449921128Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971105.17e-60PREDICTED: heat stress transcription factor A-8
SwissprotQ9S7U53e-47HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A061E9P61e-57A0A061E9P6_THECC; Heat shock transcription factor A8, putative
STRINGEOY013632e-58(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-49heat shock transcription factor A8