PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24931_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 725aa    MW: 80810.8 Da    PI: 6.7938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24931_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-08677708437
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK 37 
                                  h + ErrRR+ri+ +++ L+el+P++  +++k+
  Cotton_A_24931_BGI-A2_v1.0 677 LHTISERRRRERIRGKIQALQELIPNC--NKNKR 708
                                 699***********************7..36665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18202.4E-5158139IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534745.09E-2666153IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF581136.28E-5237322No hitNo description
Gene3DG3DSA:1.20.120.201.1E-4249318No hitNo description
SuperFamilySSF534745.09E-26319393IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.4E-51319563IPR029058Alpha/Beta hydrolase fold
PfamPF005615.5E-6328535IPR000073Alpha/beta hydrolase fold-1
SuperFamilySSF534745.09E-26492550IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF474591.44E-7671710IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-7673707IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.81673725IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5677708IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MQSDIRTALH VAFSSIGSLS PFRRSTLTLP PRCLRPAASL GLLSRPFSTS ASLPDKPSIC  60
TADELHYVSL PNSHWRLALW RYHPPPQATP RNHPLLLLSG VGTNAIGYDL SPESSFARYM  120
SGQGFDTWIL EVRGAGLSVQ GSNFKQIKES ANAVSEQMEA VAKGVTNGMS PVQQPNNVSD  180
TLSDSEISHF GQDSIGIATA WDESKLVSKL TEILMRLSER LSGFLSDGQS RLISAKLFDQ  240
ISNLLEGSQL SDRFEEVRAN LSNLLEKQQN SGITSQIRDL SQRLVNIIEE GQRSVSPQFI  300
DMQERLSSTI EDFQKQLDLI VKYDWDFDHY LEEDVPAAME YIRAHTKPKD GKLLAVGHSM  360
GGILLYAKLA RCGFEGREPE LKAVVTLASS LDYTSSSSTL KLLLPLADPA QALNVPVVPL  420
GAMLAAAYPL SSRPPYVLAW LNNLISAEDM MHPELLKKLV LNNFCTIPAK LLLQLTSAFR  480
ERGLCDRNGK FFFKDHLHKS NVPVLAIAGD QDLICPPEAV EETVKLLPRN LVTYKIFGEH  540
QGPHYAHYDL VGGRLAVEQV YPCHKDVGES SQNHGDEVLP HSLTIAALVG QDDYFQNAFV  600
MTSSFQTHPI NQNPQGIEFP EEISLEPDSG QSNQRKRKLF ELENSKCLQQ EVAGVSQGLE  660
RNQNEQQQPK QKRRGKLHTI SERRRRERIR GKIQALQELI PNCNKNKRRD PAMEQTELPQ  720
FVCGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1671685KRRGKLHTISERRRR
2673685RGKLHTISERRRR
3681686ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612623.10.0PREDICTED: uncharacterized protein LOC108457923 isoform X1
TrEMBLA0A2P5XS780.0A0A2P5XS78_GOSBA; Uncharacterized protein
STRINGGorai.012G124000.10.0(Gossypium raimondii)