PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24824_BGI-A2_v1.0
Common NameF383_03880
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 353aa    MW: 38501.5 Da    PI: 4.5881
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24824_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16208244135
                        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Cotton_A_24824_BGI-A2_v1.0 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                                 *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94268103IPR010399Tify domain
SMARTSM009794.2E-768103IPR010399Tify domain
PfamPF062003.5E-1071102IPR010399Tify domain
PfamPF062039.8E-15136177IPR010402CCT domain
PROSITE profilePS5101712.65136178IPR010402CCT domain
SuperFamilySSF577165.7E-12201257No hitNo description
PROSITE profilePS501148.893202258IPR000679Zinc finger, GATA-type
SMARTSM004016.5E-12202255IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14206249IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.97E-16207257No hitNo description
PROSITE patternPS003440208235IPR000679Zinc finger, GATA-type
PfamPF003206.8E-14208244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFVDHARG TIQIEDDDGD YEDDAMDDVE DANANSVNVA EHGTGVVGGV  60
NGGGGVVMAS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGRDIPTDV PTIEVPFDQN  120
NRGVGDLPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR KNGQFASLKE  180
STSTSSWDSS QTDLQDGTPR PKTVVRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLSK GGRSISMDQN EPETKIDVKP SIMEGNFPGN QDEHGNPLKD VTDGSNNASV  300
NPDEEDLHEN AEDLKNSLPV GIVHPSADDD EQEPLVELAN PSDTEIDIPS SFD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3263080.0KP326308.1 Gossypium barbadense JAZ18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646237.10.0PREDICTED: GATA transcription factor 24-like isoform X4
SwissprotQ8GXL71e-69GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0B0MC400.0A0A0B0MC40_GOSAR; GATA transcription factor 24-like protein
STRINGGorai.010G033400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-68ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]