PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24794_BGI-A2_v1.0
Common NameF383_06041
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 288aa    MW: 33103 Da    PI: 6.3175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24794_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.41.2e-48181433128
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                 pGfrFhPtdeel+ +yL++kv++k+l++ e ik++diyk++P+dLpk+   +e+e+yfF++r +ky+++ r+nr+t sg+Wka
  Cotton_A_24794_BGI-A2_v1.0  18 PGFRFHPTDEELIGFYLRRKVDNKSLRI-ELIKQIDIYKYDPSDLPKTSMMGENELYFFCRRGRKYRNSVRPNRVTGSGFWKA 99 
                                 9***************************.89***************87777899***************************** PP

                         NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 tg dk+v+   ++e++glkktLv+y+g+a kg+ktdW+mhe+rl
  Cotton_A_24794_BGI-A2_v1.0 100 TGIDKPVFPVgSSEAIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 143
                                 ********9867888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5410164IPR003441NAC domain
PROSITE profilePS5100551.42916164IPR003441NAC domain
PfamPF023657.5E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNMVHGTTTT VEEDVPLPGF RFHPTDEELI GFYLRRKVDN KSLRIELIKQ IDIYKYDPSD  60
LPKTSMMGEN ELYFFCRRGR KYRNSVRPNR VTGSGFWKAT GIDKPVFPVG SSEAIGLKKT  120
LVYYRGSAGK GTKTDWMMHE FRLPNPTLTA QDAEVWTICR IFKRHKKNKQ EWRQGATKRA  180
STSNGNGVHG YERCSVESSS HENYITFGSQ SIENYDDNDD DDGDGEMVMD HMKNDGSCRR  240
EWYHGEMQCM VSSSSPSSSF STENDFFTNA NWDELKSVVE LDLDPFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4811711173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106450.0KC110645.1 Gossypium hirsutum NAC protein 10 (NAC10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632342.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0B0NPA40.0A0A0B0NPA4_GOSAR; NAC domain-containing 42-like protein
STRINGGorai.004G270400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-85NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]