PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24792_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 285aa    MW: 32437.4 Da    PI: 5.9945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24792_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.97e-48181433128
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                 pGfrFhPt+eelv +yL++kv++k+l++ e ike+diyk++P+dLpk+   +e+++yfF+kr +ky+++ r+nr+t sg+Wka
  Cotton_A_24792_BGI-A2_v1.0  18 PGFRFHPTEEELVGFYLRRKVDNKSLTI-ELIKEIDIYKYDPSDLPKTGMMGENDLYFFCKRGRKYRNSVRPNRVTGSGFWKA 99 
                                 9*************************99.89***************76667899***************************** PP

                         NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 tg dk+v+s  +ge++glkktLv+y+g+a kg kt+W+mhe+rl
  Cotton_A_24792_BGI-A2_v1.0 100 TGIDKPVFSVrSGEAIGLKKTLVYYHGSAGKGAKTEWMMHEFRL 143
                                 ********9868899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-548164IPR003441NAC domain
PROSITE profilePS5100551.06816164IPR003441NAC domain
PfamPF023651.9E-2418143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNMFDGTTTI VDEGVPLPGF RFHPTEEELV GFYLRRKVDN KSLTIELIKE IDIYKYDPSD  60
LPKTGMMGEN DLYFFCKRGR KYRNSVRPNR VTGSGFWKAT GIDKPVFSVR SGEAIGLKKT  120
LVYYHGSAGK GAKTEWMMHE FRLPNPTLTA QEAEVWTICR IFKRNKKIKQ DSRQGAAKRA  180
STSNGKGVDG NKRCSVESNS HENYITIGSQ IIENYDDDDD DGEMVMDHVM NEESCRGEWY  240
HGELQRMASS SSPSSSFSTV NDFFTNANWD ELKSILDLDL DPFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-471816519166NO APICAL MERISTEM PROTEIN
1ut4_B3e-471816519166NO APICAL MERISTEM PROTEIN
1ut7_A3e-471816519166NO APICAL MERISTEM PROTEIN
1ut7_B3e-471816519166NO APICAL MERISTEM PROTEIN
3swm_A3e-471816522169NAC domain-containing protein 19
3swm_B3e-471816522169NAC domain-containing protein 19
3swm_C3e-471816522169NAC domain-containing protein 19
3swm_D3e-471816522169NAC domain-containing protein 19
3swp_A3e-471816522169NAC domain-containing protein 19
3swp_B3e-471816522169NAC domain-containing protein 19
3swp_C3e-471816522169NAC domain-containing protein 19
3swp_D3e-471816522169NAC domain-containing protein 19
4dul_A3e-471816519166NAC domain-containing protein 19
4dul_B3e-471816519166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106450.0KC110645.1 Gossypium hirsutum NAC protein 10 (NAC10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633086.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U8JPA70.0A0A1U8JPA7_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X2
STRINGGorai.004G270200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2481034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]