PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24792_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 32437.4 Da PI: 5.9945 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.9 | 7e-48 | 18 | 143 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrFhPt+eelv +yL++kv++k+l++ e ike+diyk++P+dLpk+ +e+++yfF+kr +ky+++ r+nr+t sg+Wka Cotton_A_24792_BGI-A2_v1.0 18 PGFRFHPTEEELVGFYLRRKVDNKSLTI-ELIKEIDIYKYDPSDLPKTGMMGENDLYFFCKRGRKYRNSVRPNRVTGSGFWKA 99 9*************************99.89***************76667899***************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+v+s +ge++glkktLv+y+g+a kg kt+W+mhe+rl Cotton_A_24792_BGI-A2_v1.0 100 TGIDKPVFSVrSGEAIGLKKTLVYYHGSAGKGAKTEWMMHEFRL 143 ********9868899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-54 | 8 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.068 | 16 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-24 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MNMFDGTTTI VDEGVPLPGF RFHPTEEELV GFYLRRKVDN KSLTIELIKE IDIYKYDPSD 60 LPKTGMMGEN DLYFFCKRGR KYRNSVRPNR VTGSGFWKAT GIDKPVFSVR SGEAIGLKKT 120 LVYYHGSAGK GAKTEWMMHE FRLPNPTLTA QEAEVWTICR IFKRNKKIKQ DSRQGAAKRA 180 STSNGKGVDG NKRCSVESNS HENYITIGSQ IIENYDDDDD DGEMVMDHVM NEESCRGEWY 240 HGELQRMASS SSPSSSFSTV NDFFTNANWD ELKSILDLDL DPFLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 18 | 165 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 18 | 165 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 18 | 165 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 18 | 165 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 18 | 165 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 18 | 165 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 18 | 165 | 19 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC110645 | 0.0 | KC110645.1 Gossypium hirsutum NAC protein 10 (NAC10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633086.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-79 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U8JPA7 | 0.0 | A0A1U8JPA7_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
STRING | Gorai.004G270200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24810 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-82 | NAC domain containing protein 42 |