PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24786_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 91aa    MW: 10359.7 Da    PI: 9.2512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24786_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-0820591554
                                HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                +i +  ++L++llP+ + + +s K+s a +L+++++YI+sL
  Cotton_A_24786_BGI-A2_v1.0 20 QIYDLVSKLQQLLPEvR-NRHSDKVSAAKVLQETCNYIRSL 59
                                6777889********65.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-8478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.785559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-91977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRSRQ SSGSRITDDQ IYDLVSKLQQ LLPEVRNRHS DKVSAAKVLQ ETCNYIRSLH  60
REVDDISERL SELLATTDSA QAAVIRSLLM Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667692.13e-58PREDICTED: transcription factor ILI6-like
RefseqXP_017640926.13e-58PREDICTED: transcription factor ILI6-like
SwissprotF4JCN91e-37PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A1U8HNS07e-57A0A1U8HNS0_GOSHI; transcription factor ILI6-like
TrEMBLA0A2P5WV237e-57A0A2P5WV23_GOSBA; Uncharacterized protein
STRINGGorai.003G095400.13e-57(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.15e-37activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]