PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24777_BGI-A2_v1.0
Common NameF383_28513
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 290aa    MW: 33753.5 Da    PI: 4.5792
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24777_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.7e-2089142356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Cotton_A_24777_BGI-A2_v1.0  89 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 142
                                 56689************************************************9 PP

2HD-ZIP_I/II125.91.8e-4088179192
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L ++y++lk++ + L ke
  Cotton_A_24777_BGI-A2_v1.0  88 EKKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAKYNSLKADYDDLLKE 170
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelk 92 
                                 +++L+ee+ 
  Cotton_A_24777_BGI-A2_v1.0 171 KDKLKEEVL 179
                                 *****9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-2074146IPR009057Homeodomain-like
PROSITE profilePS5007117.50884144IPR001356Homeobox domain
SMARTSM003892.0E-2087148IPR001356Homeobox domain
PfamPF000462.2E-1789142IPR001356Homeobox domain
CDDcd000868.03E-1889145No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2091151IPR009057Homeodomain-like
PRINTSPR000311.1E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5124140IPR000047Helix-turn-helix motif
PfamPF021832.9E-13144186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAGGRVYPSN NDSTDGFPNN LSVLLQNQRL HPLFIPESSP SPFLGTRSIV SFEDSLKTSR  60
PKRSIFNMFD EQENGYDEYL DECFHQPEKK RRLTVDQIQF LEKSFEVDNK LEPERKIQLA  120
KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY DTLLAKYNSL KADYDDLLKE KDKLKEEVLQ  180
LTDKLQTKEN EQRNSEFSDV KPLLLQEPSQ KPIVVSMAAC KQEDIDSDHI PQYYSDEFHS  240
SLLEAADSSY LFEPDQSDLS QDEEDSLHPP ASSSNFGFPV EGHPFWSWTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638886.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0B0MRK70.0A0A0B0MRK7_GOSAR; Homeobox-leucine zipper HAT5-like protein
STRINGGorai.003G094500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2837133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-44homeobox 1