PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_24777_BGI-A2_v1.0 | ||||||||
Common Name | F383_28513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 33753.5 Da PI: 4.5792 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.7e-20 | 89 | 142 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Cotton_A_24777_BGI-A2_v1.0 89 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 142 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.9 | 1.8e-40 | 88 | 179 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 ekkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L ++y++lk++ + L ke Cotton_A_24777_BGI-A2_v1.0 88 EKKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAKYNSLKADYDDLLKE 170 69********************************************************************************* PP HD-ZIP_I/II 84 veeLreelk 92 +++L+ee+ Cotton_A_24777_BGI-A2_v1.0 171 KDKLKEEVL 179 *****9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.89E-20 | 74 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.508 | 84 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-20 | 87 | 148 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-17 | 89 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.03E-18 | 89 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-20 | 91 | 151 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 115 | 124 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 119 | 142 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 124 | 140 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-13 | 144 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MAGGRVYPSN NDSTDGFPNN LSVLLQNQRL HPLFIPESSP SPFLGTRSIV SFEDSLKTSR 60 PKRSIFNMFD EQENGYDEYL DECFHQPEKK RRLTVDQIQF LEKSFEVDNK LEPERKIQLA 120 KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY DTLLAKYNSL KADYDDLLKE KDKLKEEVLQ 180 LTDKLQTKEN EQRNSEFSDV KPLLLQEPSQ KPIVVSMAAC KQEDIDSDHI PQYYSDEFHS 240 SLLEAADSSY LFEPDQSDLS QDEEDSLHPP ASSSNFGFPV EGHPFWSWTY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 136 | 144 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638886.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A0B0MRK7 | 0.0 | A0A0B0MRK7_GOSAR; Homeobox-leucine zipper HAT5-like protein | ||||
STRING | Gorai.003G094500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28371 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-44 | homeobox 1 |