PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24752_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 152aa    MW: 17170.6 Da    PI: 10.2087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24752_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-181667155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++y+GVr ++ +g + AeIrdp++  + +r++l +f taeeAa+a+++a+ +++g
  Cotton_A_24752_BGI-A2_v1.0 16 TRYRGVRSRP-WGTFGAEIRDPNQ--QGARVWLRTFNTAEEAARAYDRAAYAMRG 67
                                68*****999.**********944..44*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-161676No hitNo description
PfamPF008471.6E-111667IPR001471AP2/ERF domain
SMARTSM003804.4E-291781IPR001471AP2/ERF domain
PROSITE profilePS5103222.2211775IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-211777IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-291777IPR001471AP2/ERF domain
PRINTSPR003673.6E-91829IPR001471AP2/ERF domain
PRINTSPR003673.6E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEGNCNSKKG SGGEMTRYRG VRSRPWGTFG AEIRDPNQQG ARVWLRTFNT AEEAARAYDR  60
AAYAMRGQFA ILNFPHEYPM GANAYHRSSS TGSSSSSSSS IIERGKQVFE IEYWMIICLK  120
NFLKSKREGA RKCEGMDMVK IRTVLFHIGI LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3391136109Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483152.12e-54PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LSX06e-33ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A0D2NY165e-53A0A0D2NY16_GOSRA; Uncharacterized protein
STRINGGorai.006G250100.19e-54(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-23ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]