PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24749_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 138aa    MW: 15010.7 Da    PI: 6.5468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24749_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-191970155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++y+GVr ++ +g + AeIrdp++  + +r++lg+f taeeAa+a+++a+ +++g
  Cotton_A_24749_BGI-A2_v1.0 19 TRYRGVRARP-WGTFGAEIRDPNQ--QGARVWLGTFNTAEEAARAYDRAAYAMRG 70
                                68********.**********944..44*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-131970IPR001471AP2/ERF domain
CDDcd000183.29E-171979No hitNo description
Gene3DG3DSA:3.30.730.108.0E-312080IPR001471AP2/ERF domain
PROSITE profilePS5103223.0642078IPR001471AP2/ERF domain
SMARTSM003805.7E-322084IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-222080IPR016177DNA-binding domain
PRINTSPR003671.6E-102132IPR001471AP2/ERF domain
PRINTSPR003671.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEGNHKAKDD KEGSGGGMTR YRGVRARPWG TFGAEIRDPN QQGARVWLGT FNTAEEAARA  60
YDRAAYAMRG QFAILNFPHE YPMGSGGGAA ANATTSAASS SSSSSAMERG KQVLEVEYLD  120
DSLLEELLEI EEKKKKKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-37131237114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841502e-33JX584150.1 Gossypium hirsutum clone NBRI_GE17372 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609351.15e-98PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC54e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8N2766e-74A0A1U8N276_GOSHI; ethylene-responsive transcription factor 14-like
STRINGGorai.006G250000.12e-55(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3575722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.17e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]