PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24624_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 384aa    MW: 43241.1 Da    PI: 6.5313
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24624_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.78.1e-1199134438
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeL 38 
                                 +k +rr+++NReAAr+sR+RKka++++Le+ + k L
  Cotton_A_24624_BGI-A2_v1.0  99 DKIQRRLAQNREAARKSRLRKKAYVQQLENsRLKLL 134
                                 799*************************97334433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-893144No hitNo description
SMARTSM003383.3E-796178IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.7698140IPR004827Basic-leucine zipper domain
PfamPF001701.2E-799135IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.74E-7100140No hitNo description
PROSITE patternPS000360103118IPR004827Basic-leucine zipper domain
PfamPF141442.0E-29187261IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MCCSFQTPFS SSTYAKAASI FDSRSMESQF VPSRRMDIYD PIQQIGMWGE SFNANSNLHA  60
SVSMIAEMDN KISNESETAS HEMLAPSNKY DQEATKRIDK IQRRLAQNRE AARKSRLRKK  120
AYVQQLENSR LKLLQLEQEL VQMKQQGVYM GGGLVGGNLG FSAPVKSGIA AFETEYARWM  180
DEQSKQICGL RTALNAEISD TDLQMLVETG MKHYSELFRM KSTAAKSDVF YVMSGMWKTS  240
AEQFFSWIGG FRPSELLKVL LPQLDSLTEQ QFFEVCNLKQ SCQQAEDALS QGMEKLREIV  300
SVTVADGQLG EGSYSSQVTT AMEKVEALVS FVNQADHIRQ ETLQQMSRIL TTRQTARGLL  360
ALGEYFERLR ALSSLWATCA REPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648213.10.0PREDICTED: transcription factor TGA4-like
RefseqXP_017648214.10.0PREDICTED: transcription factor TGA4-like
SwissprotQ391621e-172TGA4_ARATH; Transcription factor TGA4
SwissprotQ392371e-172TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A2P5SR580.0A0A2P5SR58_GOSBA; Uncharacterized protein
STRINGGorai.011G112200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2480734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-158TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]