PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24506_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 278aa MW: 29963.2 Da PI: 6.6394

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24506_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184.2	5.3e-57	85	238	6	153
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkq 83 + C+dCGn+akk+C ++RCRtCCksrg+dCathvkstWvpaa+r++r+ + ++ kr+r l+ +++ Cotton_A_24506_BGI-A2_v1.0 85 KVCRDCGNRAKKECGYSRCRTCCKSRGYDCATHVKSTWVPAARRKDRKVLVIGDDDGGGNGGwssgsSSCGGKRQRVLNLTSN 167 57*******************************************888777655544433555545556677777777888 PP DUF702 84 salsstklssaeskkeletss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +a++s + + + ++ + +++ lP +v+++avfrc++v++++dge+e+aYq++v+i+GhvfkG+Lyd+G++ Cotton_A_24506_BGI-A2_v1.0 168 AASKSLNFEADTCHQDSGFKEsLPVRVQAPAVFRCIQVTAISDGEAEIAYQATVNISGHVFKGFLYDHGAD 238 8888888887777777665544*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	2.6E-26	86	128	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	7.4E-54	86	238	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	8.4E-26	190	236	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MLGLHNIFLI APPPQENQQQ QAPPPPPPPP QPFNQNYNLT DTNLWTSKRS TAQESIPVFQ 60 KKDGTLNNVE EEDDDESGAA GGCFKVCRDC GNRAKKECGY SRCRTCCKSR GYDCATHVKS 120 TWVPAARRKD RKVLVIGDDD GGGNGGWSSG SSSCGGKRQR VLNLTSNAAS KSLNFEADTC 180 HQDSGFKESL PVRVQAPAVF RCIQVTAISD GEAEIAYQAT VNISGHVFKG FLYDHGADVK 240 NEFPCISKVV FESSSSGRDR DSSSPVVDPA NTIAASGD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ108557	9e-37	DQ108557.1 Corchorus olitorius SSR marker J159-M13F genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017646909.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 6
Refseq	XP_017646911.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 6
Swissprot	Q94CK9	2e-47	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1U8IKX9	0.0	A0A1U8IKX9_GOSHI; protein SHI RELATED SEQUENCE 6-like
STRING	Gorai.011G215400.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-48	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]