PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24448_BGI-A2_v1.0

Common Name

F383_29600

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 517aa MW: 56265.8 Da PI: 7.0107

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24448_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	337	384	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cotton_A_24448_BGI-A2_v1.0 337 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 384 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.29E-10	331	388	No hit	No description
SuperFamily	SSF47459	6.67E-17	331	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.523	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-17	333	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	337	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-9	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MEKDQVFMGE ELNRAAAAQA GWNSCSFGME METDELNCVG SCFLNPKWHN SMDQGDPFES 60 ALSSMVCSPA ASNAGSTNFP ASGDNTMMTD LIGKLGNICN TGDISPQSFI KPPNNNNNCS 120 SNTSCYTSSL DSPPKLNLSM MGGNQILKHP SLVPVSADPG FAERAARYSC FNGLNAQLGV 180 TEAEFVQLTR VSTNQSIMVT GSQVHVPDSN KNTLQNGNSC SHKRNSRLSR CSSPENGDSK 240 DESSISEQIP GVGSSIKAQN DANARKRKSM PRGKAKETPS PAAADAKIAE ENDESTAKRS 300 KQQNDSAKAE NKENPKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV 360 PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLATVNPR MNANTEALLS KDMFRSRGSL 420 PHSHYPMDSS VLAFGLRYQP QQGLPMNNVI SNDTQIQFSM NPANAALHKT QGLQLPPVDG 480 ITDANPQIGS FWDDDLQSIV QMGFGQNPPQ SCQSKHS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MEKDQVFMGE ELNRAAAAQA GWNSCSFGME METDELNCVG SCFLNPKWHN SMDQGDPFES  60
ALSSMVCSPA ASNAGSTNFP ASGDNTMMTD LIGKLGNICN TGDISPQSFI KPPNNNNNCS  120
SNTSCYTSSL DSPPKLNLSM MGGNQILKHP SLVPVSADPG FAERAARYSC FNGLNAQLGV  180
TEAEFVQLTR VSTNQSIMVT GSQVHVPDSN KNTLQNGNSC SHKRNSRLSR CSSPENGDSK  240
DESSISEQIP GVGSSIKAQN DANARKRKSM PRGKAKETPS PAAADAKIAE ENDESTAKRS  300
KQQNDSAKAE NKENPKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV  360
PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLATVNPR MNANTEALLS KDMFRSRGSL  420
PHSHYPMDSS VLAFGLRYQP QQGLPMNNVI SNDTQIQFSM NPANAALHKT QGLQLPPVDG  480
ITDANPQIGS FWDDDLQSIV QMGFGQNPPQ SCQSKHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647493.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A0B0MQ68	0.0	A0A0B0MQ68_GOSAR; Transcription factor bHLH62-like protein
STRING	Gorai.011G150200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-79	bHLH family protein