PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24410_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 313aa MW: 35312.7 Da PI: 7.9913

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24410_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	167.3	1.2e-51	63	311	110	373
GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl.e 190 + +HiiDfdi++G+QW++L+q+L R++g + l+iT+++s +s+ ++ el+ t++ L++fA+e++++f+ +++ rle+l + Cotton_A_24410_BGI-A2_v1.0 63 SSIHIIDFDIGYGGQWASLMQELVRRNGG-ALLKITVFASLSSHdDELELSFTQDYLKHFASEINMDFDLKIM---RLESLhS 141 689*******************99777.89****999999**********************8...4444422 PP GRAS 191 leeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 ++L ++ ++Ea+aVnl++ ++ + s + + vL ++k+lsPk+vv+ ++ ++sF +++++a + y+ +++s Cotton_A_24410_BGI-A2_v1.0 142 GSRLlprHLPENEAIAVNLSIGSFSNY--SST----LHLVLGFLKQLSPKIVVCLDR----MDASFPHHIIHAHQSYTGILES 214 34443446677******888887..333....446***********876....6889**************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 l+a + +++ +k+Er ll+++i+ +v ++++ e+ r + + GF+p ++s+ ++ qa++ +++++++g++v++ Cotton_A_24410_BGI-A2_v1.0 215 LDAV--NMKNALQKIERLLLQPDIERIVLGRHRS----LERTPPSRTIFLHYGFSPFSFSNLTEFQAECFVQRTPVRGFHVQK 291 776..468999**************99998....77778889********************************* PP GRAS 354 esgslvlgWkdrpLvsvSaW 373 ++ slvl ++r+L+++SaW Cotton_A_24410_BGI-A2_v1.0 292 RQSSLVLWRQGRALIAASAW 311 ****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.758	1	292	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-49	63	311	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MPLSPPPPMR LNSSSTTPIG MANLQLQQPI IDQLIQAGCF LLQGGVTVIP SVEHYQTQRL 60 WCSSIHIIDF DIGYGGQWAS LMQELVRRNG GALLKITVFA SLSSHDDELE LSFTQDYLKH 120 FASEINMDFD LKIMRLESLH SGSRLLPRHL PENEAIAVNL SIGSFSNYSS TLHLVLGFLK 180 QLSPKIVVCL DRMDASFPHH IIHAHQSYTG ILESLDAVNM KNALQKIERL LLQPDIERIV 240 LGRHRSLERT PPSRTIFLHY GFSPFSFSNL TEFQAECFVQ RTPVRGFHVQ KRQSSLVLWR 300 QGRALIAASA WSC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022757026.1	1e-122	scarecrow-like protein 6
Swissprot	O81316	1e-78	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2P5WE50	0.0	A0A2P5WE50_GOSBA; Uncharacterized protein
STRING	EOX96296	1e-122	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	6e-75	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]