PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24348_BGI-A2_v1.0 | ||||||||
Common Name | F383_19787 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 368aa MW: 40412.1 Da PI: 5.3522 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.7 | 6.8e-16 | 139 | 185 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Cotton_A_24348_BGI-A2_v1.0 139 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 185 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-20 | 132 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-20 | 132 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.86 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.88E-17 | 138 | 189 | No hit | No description |
Pfam | PF00010 | 2.3E-13 | 139 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 141 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGDNLNLNMF HYKNINNNCY NYNNGTCLPP PPPSDDISNL LHQILGHSSS YSSSSSSSSG 60 MAHFGGPSEN PRRLSPSPAP PGGGVKQGGG WGLIGAPGEN DTDEYDCESE EGIEALVDEA 120 PPKPAPPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK ASMLDEAIEY 180 LKQLQLQVQM LSMRNGLSLH PMCLPGVLQP LQFSQTRMNF GEENGSLPIN MSETVPANPE 240 TSVQMVFDLP NQCSSSNPGS VPNISNIITS ETSFGLESIQ AHFWPFQLLP SSQDICREDI 300 LHHHQLKTNT PEFGLVATTT VSLPFDTQES DLKEIYSLDA STMRTEQSNS VLLKNLDHDL 360 ILSPHHPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617172.1 | 0.0 | PREDICTED: transcription factor SPATULA-like isoform X2 | ||||
Swissprot | Q9FUA4 | 2e-57 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | A0A0B0MM58 | 0.0 | A0A0B0MM58_GOSAR; Transcription factor SPATULA-like protein | ||||
STRING | Gorai.007G214800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4199 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 3e-56 | bHLH family protein |