PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24336_BGI-A2_v1.0 | ||||||||
Common Name | F383_15907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 258aa MW: 30087.1 Da PI: 6.4081 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.1 | 1.9e-25 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkl 81 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ kw+vtk+ Cotton_A_24336_BGI-A2_v1.0 78 EFYISYGRHIGFTVRIHHNRRSRINNSVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKF 159 6******************************************99983333.244899************************* PP FAR1 82 eleHnHela 90 ++eHnH+l+ Cotton_A_24336_BGI-A2_v1.0 160 VKEHNHSLM 168 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-23 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Gene3D | G3DSA:3.40.50.300 | 5.4E-4 | 175 | 242 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MENVSSQGID SDESVRCLQV ENFDEQELVD HGISDNIDLC LGEVDKIIEE SSEGLPLLRN 60 AAEPYIGMEF KSRDAAREFY ISYGRHIGFT VRIHHNRRSR INNSVIGQDF VCSKEGFREK 120 KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGSTK 180 NLITEDEKDQ RIRELTQELN NEKQKCKRRC AAYQEQLRTI LKFVEEHTDQ LSKKVQDIVK 240 NISELEEERL EDSDCRYV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625906.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0B0NC58 | 0.0 | A0A0B0NC58_GOSAR; Far1-related sequence 5-like protein | ||||
STRING | Gorai.N002500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16529 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-37 | FAR1 family protein |